Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01534 ATGGTGAAGTTGGCTGTTGGTTCCCCGGCTGATTCCTTCAGTGCGGCCTCTCTTAAAGCTTATCTCTCTGAGTTCATCGCCACTCTCCTTTTTGTCTTTGCCGGAGTCGGCTCCGCCATCGCCTACGGTAAGTTGACGTCCGATGCGGCGTTGGATCCACCAGGTCTGGTGGCCGTGGCCGTGGCTCATGCATTCGCTCTCTTCGTCGGGGTGTCGATGGCCGCGAACATCTCCGGTGGCCATCTCAACCCCGCTGTGACCTTTGGGTTGGCCATCGGCGGCAACATCACCATCTTGACCGGCTTGTTCTACTGGATCGCCCAGTCGCTTGGCTCCATTGTTGCCTGCCTCCTCCTCCAGTTCGTTACCAACGGCAAGAGCATCCCGACCCACGGCGTGGCAGCGGGATTGGGAGCAATTGAAGGCGTAGTGTTCGAGATCATAATCACCTTCGGTCTGGTGTACACAGTTTACGCTACAGCCGCAGACCCTAAAAAGGGCTCTCTTGGGACCATCGCCCCAATTGCTATTGGGTTCATAGTTGGTGCCAACATCCTTGCTGCCGGCCCATTTAGCGGTGGGTCCATGAACCCAGCCCGTTCATTCGGCCCAGCTGTTGTCAGTGGAGACTTCTCTCAGATTTGGATCTACTGGGTCGGCCCACTTATTGGTGGTGGGCTTGCTGGGCTTATCTATGGCGACGTCTTTATTGGGTCTTATGCCTCTGTTCCAGTCTCTGATGACTATGCTTAA 753 55.91 MVKLAVGSPADSFSAASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDPPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQSLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFIGSYASVPVSDDYA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8729369 8730866 - CmaCh02G015340.1 Cma02g01534 289285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01534 250 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
Cma02g01534 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01534 250 SUPERFAMILY Aquaporin-like 16 240 IPR023271 -
Cma02g01534 250 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01534 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cma02g01534 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Cma02g01534 250 PANTHER AQUAPORIN TIP2-2-RELATED 1 250 - -
Cma02g01534 250 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01534 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01534 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01534 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01534 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01534 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01534 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01534 Cma-Chr2:8729369 Cma08g00719 Cma-Chr8:4353546 4.97E-126 dispersed
Cma02g01534 Cma-Chr2:8729369 Cma03g01199 Cma-Chr3:8008162 1.97E-102 transposed
Cma02g01534 Cma-Chr2:8729369 Cma07g00887 Cma-Chr7:4200653 2.10E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01534 K09873 - csv:101203925 457.218