Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g01534 | ATGGTGAAGTTGGCTGTTGGTTCCCCGGCTGATTCCTTCAGTGCGGCCTCTCTTAAAGCTTATCTCTCTGAGTTCATCGCCACTCTCCTTTTTGTCTTTGCCGGAGTCGGCTCCGCCATCGCCTACGGTAAGTTGACGTCCGATGCGGCGTTGGATCCACCAGGTCTGGTGGCCGTGGCCGTGGCTCATGCATTCGCTCTCTTCGTCGGGGTGTCGATGGCCGCGAACATCTCCGGTGGCCATCTCAACCCCGCTGTGACCTTTGGGTTGGCCATCGGCGGCAACATCACCATCTTGACCGGCTTGTTCTACTGGATCGCCCAGTCGCTTGGCTCCATTGTTGCCTGCCTCCTCCTCCAGTTCGTTACCAACGGCAAGAGCATCCCGACCCACGGCGTGGCAGCGGGATTGGGAGCAATTGAAGGCGTAGTGTTCGAGATCATAATCACCTTCGGTCTGGTGTACACAGTTTACGCTACAGCCGCAGACCCTAAAAAGGGCTCTCTTGGGACCATCGCCCCAATTGCTATTGGGTTCATAGTTGGTGCCAACATCCTTGCTGCCGGCCCATTTAGCGGTGGGTCCATGAACCCAGCCCGTTCATTCGGCCCAGCTGTTGTCAGTGGAGACTTCTCTCAGATTTGGATCTACTGGGTCGGCCCACTTATTGGTGGTGGGCTTGCTGGGCTTATCTATGGCGACGTCTTTATTGGGTCTTATGCCTCTGTTCCAGTCTCTGATGACTATGCTTAA | 753 | 55.91 | MVKLAVGSPADSFSAASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDPPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQSLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFIGSYASVPVSDDYA | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8729369 | 8730866 | - | CmaCh02G015340.1 | Cma02g01534 | 289285 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g01534 | 250 | Gene3D | Glycerol uptake facilitator protein. | 2 | 246 | IPR023271 | - | |
Cma02g01534 | 250 | Pfam | Major intrinsic protein | 14 | 232 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma02g01534 | 250 | SUPERFAMILY | Aquaporin-like | 16 | 240 | IPR023271 | - | |
Cma02g01534 | 250 | TIGRFAM | MIP: MIP family channel proteins | 23 | 232 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma02g01534 | 250 | ProSitePatterns | MIP family signature. | 81 | 89 | IPR022357 | - | |
Cma02g01534 | 250 | PANTHER | AQUAPORIN-8 | 1 | 250 | IPR034294 | - | |
Cma02g01534 | 250 | PANTHER | AQUAPORIN TIP2-2-RELATED | 1 | 250 | - | - | |
Cma02g01534 | 250 | CDD | MIP | 19 | 232 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma02g01534 | 250 | PRINTS | Major intrinsic protein family signature | 19 | 38 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma02g01534 | 250 | PRINTS | Major intrinsic protein family signature | 63 | 87 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma02g01534 | 250 | PRINTS | Major intrinsic protein family signature | 100 | 119 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma02g01534 | 250 | PRINTS | Major intrinsic protein family signature | 145 | 163 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma02g01534 | 250 | PRINTS | Major intrinsic protein family signature | 178 | 200 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma02g01534 | 250 | PRINTS | Major intrinsic protein family signature | 215 | 235 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01534 | Cma-Chr2:8729369 | Cma08g00719 | Cma-Chr8:4353546 | 4.97E-126 | dispersed | |
Cma02g01534 | Cma-Chr2:8729369 | Cma03g01199 | Cma-Chr3:8008162 | 1.97E-102 | transposed | |
Cma02g01534 | Cma-Chr2:8729369 | Cma07g00887 | Cma-Chr7:4200653 | 2.10E-102 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g01534 | K09873 | - | csv:101203925 | 457.218 |