Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01541 ATGGAATCCTTCGTCACTTCATTTTTGTTCTTCATTTCCATTTCCCCTTTCTTTCTTCTATCAACAACGCAACCAATTTTTTCACCCTCTGCCCCCGTCGCTGCCCCATACCGCCGCCACAAGTGGGTCGGACCCACTGGCCATCGGCTGATCAAAGTAGACGGTAACGGGTCCGGCGACTTCCTCACTGTCCAAGCCGCCGTCAATGCAGTCCCGGATTATAACACCGTGAGCACCGTTATCCGAATCAGCCCCGGATATTACGTGGAGAAGGTGGTGGTGGCGGCGACGAAGCCGTACATAACATTTGAAGGAGGAGGGAAAGAGAGGACGGTGATAGAATGGCACGACAGGGCAGGTGACCGAGATCCCAGTGGGCAGCAGCTGCGTACCTACAGAACAGCCTCGGTCACAGTTTTCGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAGGAATACAGCACCGGCGCCGATGCCCGGAATGCAAGGGTGGCAAGCGGCGGCGTTCCGTATATCCGGCGATAAAGCCTATTTTTCCGGCTGCGGGTTCTACGGTGCTCAAGATACGTTGTGTGATGACGCGGGCCGCCATTACTTCAAAGAATGCTACATTGAAGGCTCCATAGACTTTATCTTTGGAAATGGGCGTTCCATGTATAAGGATTGTGAGCTGCACTCCATCGCCACTCGGTTCGGTTCTATAGCGGCACAAGATAGAAACTCGCCGGACGAGAAGACCGGGTTTGCTTTCGTCCGGTGCAAGGTGACCGGTTCAGGACCCGTATACGTGGGCCGGGCCATGGGCCAGTACTCTAGAATCGTCTACGCGTATACATACTTTGATGACGTGGTGGCCCACGGGGGATGGGATGACTGGGACCACGTCAGCAACAAAAACAAGACGGTATTTTTTGGAGCATACAAATGCTGGGGCCCAGGAGCAAGCAAAGTGAAGGGAGTATCATGGGCCAGGGAGTTGGAGTTCGAAGAGGCCCATCCATTTCTTGTGAAGAGCTTTGTGAATGGCAGGCACTGGATTGCACCCTCTGATGCTTAG 1059 53.54 MESFVTSFLFFISISPFFLLSTTQPIFSPSAPVAAPYRRHKWVGPTGHRLIKVDGNGSGDFLTVQAAVNAVPDYNTVSTVIRISPGYYVEKVVVAATKPYITFEGGGKERTVIEWHDRAGDRDPSGQQLRTYRTASVTVFANYFSARNISFRNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPDEKTGFAFVRCKVTGSGPVYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHVSNKNKTVFFGAYKCWGPGASKVKGVSWARELEFEEAHPFLVKSFVNGRHWIAPSDA 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8751985 8753920 - CmaCh02G015410.1 Cma02g01541 289292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01541 352 Pfam Pectinesterase 53 343 IPR000070 GO:0030599|GO:0042545
Cma02g01541 352 Gene3D - 48 351 IPR012334 -
Cma02g01541 352 SUPERFAMILY Pectin lyase-like 48 349 IPR011050 -
Cma02g01541 352 ProSitePatterns Pectinesterase signature 2. 205 214 IPR033131 -
Cma02g01541 352 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 37 351 - -
Cma02g01541 352 PANTHER PECTINESTERASE 68-RELATED 37 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00394 Cma-Chr2:1995000 Cma02g01541 Cma-Chr2:8751985 1.05E-57 dispersed
Cma02g01541 Cma-Chr2:8751985 Cma10g00675 Cma-Chr10:3060694 1.44E-105 dispersed
Cma09g00997 Cma-Chr9:5088741 Cma02g01541 Cma-Chr2:8751985 4.05E-96 transposed
Cma15g01122 Cma-Chr15:7148399 Cma02g01541 Cma-Chr2:8751985 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01541 - - cmo:103483059 622.468