Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g01557 | ATGTCATCCTCTTCTTCTCCTACTTCTTCTACTACTACTACTACTACCACTCAGCAGCAGCTGGACCACCACCTTCCCTCACCTGAGCAGCTCTGTTATGTCCATTGTAACATTTGTGACACTGTCCTTGCGGTCAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACAGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTGAACATGCGTGGCTTGCTTTTGCCTTCCGCTAATCAGTTTCATCAGCTCGGCCACTCTTTCTTTTCTCCTTCCCATAACATTCTGGAAAACATCCCAACGCCAAATTCCAATTATCTCATCAACCAGTTCGCAGCTACTAACACTTTTGGAATGCCATCTCGAGGAGTTGCTGATGAGCTCCCTAGGCCACCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCATACAACCGCTTCATCAAAGACGAGATCCAACGCATCAAGTCAGTGAATCCGGATATATCCCACAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCACACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGGCAGCAGGAAGGAGATCATGGGAGTGTTGTGATGAAAGACAATGGATTTTACGCCGCCGCCTCACCCAACGTTGGTGTCTCCCATTTCTAA | 696 | 48.56 | MSSSSSPTSSTTTTTTTQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPTPNSNYLINQFAATNTFGMPSRGVADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDHGSVVMKDNGFYAAASPNVGVSHF | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8833805 | 8835686 | - | CmaCh02G015570.1 | Cma02g01557 | 289308 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g01557 | 231 | Gene3D | High mobility group box domain | 135 | 197 | IPR036910 | - | |
Cma02g01557 | 231 | SUPERFAMILY | HMG-box | 134 | 183 | IPR036910 | - | |
Cma02g01557 | 231 | Pfam | YABBY protein | 28 | 190 | IPR006780 | GO:0007275 | |
Cma02g01557 | 231 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 229 | IPR006780 | GO:0007275 | |
Cma02g01557 | 231 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cma02g01557 | 231 | PANTHER | AXIAL REGULATOR YABBY 3 | 1 | 229 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01557 | Cma-Chr2:8833805 | Cma11g00536 | Cma-Chr11:2583470 | 1.43E-56 | dispersed | |
Cma15g01149 | Cma-Chr15:7308199 | Cma02g01557 | Cma-Chr2:8833805 | 2.82E-139 | wgd | |
Cma02g01557 | Cma-Chr2:8833805 | Cma06g00763 | Cma-Chr6:3875334 | 2.25E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34538 | PF04690 | YABBY | 4.80E-71 | CL0114 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g01557 | K25796 | - | csv:101214748 | 401.364 |