Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01557 ATGTCATCCTCTTCTTCTCCTACTTCTTCTACTACTACTACTACTACCACTCAGCAGCAGCTGGACCACCACCTTCCCTCACCTGAGCAGCTCTGTTATGTCCATTGTAACATTTGTGACACTGTCCTTGCGGTCAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACAGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTGAACATGCGTGGCTTGCTTTTGCCTTCCGCTAATCAGTTTCATCAGCTCGGCCACTCTTTCTTTTCTCCTTCCCATAACATTCTGGAAAACATCCCAACGCCAAATTCCAATTATCTCATCAACCAGTTCGCAGCTACTAACACTTTTGGAATGCCATCTCGAGGAGTTGCTGATGAGCTCCCTAGGCCACCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCATACAACCGCTTCATCAAAGACGAGATCCAACGCATCAAGTCAGTGAATCCGGATATATCCCACAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCACACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGGCAGCAGGAAGGAGATCATGGGAGTGTTGTGATGAAAGACAATGGATTTTACGCCGCCGCCTCACCCAACGTTGGTGTCTCCCATTTCTAA 696 48.56 MSSSSSPTSSTTTTTTTQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPTPNSNYLINQFAATNTFGMPSRGVADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDHGSVVMKDNGFYAAASPNVGVSHF 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8833805 8835686 - CmaCh02G015570.1 Cma02g01557 289308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01557 231 Gene3D High mobility group box domain 135 197 IPR036910 -
Cma02g01557 231 SUPERFAMILY HMG-box 134 183 IPR036910 -
Cma02g01557 231 Pfam YABBY protein 28 190 IPR006780 GO:0007275
Cma02g01557 231 PANTHER PROTEIN YABBY 6-RELATED 1 229 IPR006780 GO:0007275
Cma02g01557 231 MobiDBLite consensus disorder prediction 1 21 - -
Cma02g01557 231 PANTHER AXIAL REGULATOR YABBY 3 1 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01557 Cma-Chr2:8833805 Cma11g00536 Cma-Chr11:2583470 1.43E-56 dispersed
Cma15g01149 Cma-Chr15:7308199 Cma02g01557 Cma-Chr2:8833805 2.82E-139 wgd
Cma02g01557 Cma-Chr2:8833805 Cma06g00763 Cma-Chr6:3875334 2.25E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34538 PF04690 YABBY 4.80E-71 CL0114 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01557 K25796 - csv:101214748 401.364