Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01557 ATGTCATCCTCTTCTTCTCCTACTTCTTCTACTACTACTACTACTACCACTCAGCAGCAGCTGGACCACCACCTTCCCTCACCTGAGCAGCTCTGTTATGTCCATTGTAACATTTGTGACACTGTCCTTGCGGTCAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACAGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTGAACATGCGTGGCTTGCTTTTGCCTTCCGCTAATCAGTTTCATCAGCTCGGCCACTCTTTCTTTTCTCCTTCCCATAACATTCTGGAAAACATCCCAACGCCAAATTCCAATTATCTCATCAACCAGTTCGCAGCTACTAACACTTTTGGAATGCCATCTCGAGGAGTTGCTGATGAGCTCCCTAGGCCACCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCATACAACCGCTTCATCAAAGACGAGATCCAACGCATCAAGTCAGTGAATCCGGATATATCCCACAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCACACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGGCAGCAGGAAGGAGATCATGGGAGTGTTGTGATGAAAGACAATGGATTTTACGCCGCCGCCTCACCCAACGTTGGTGTCTCCCATTTCTAA 696 48.56 MSSSSSPTSSTTTTTTTQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPTPNSNYLINQFAATNTFGMPSRGVADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDHGSVVMKDNGFYAAASPNVGVSHF 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8833805 8835686 - CmaCh02G015570.1 Cma02g01557 289308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01557 231 Gene3D High mobility group box domain 135 197 IPR036910 -
Cma02g01557 231 SUPERFAMILY HMG-box 134 183 IPR036910 -
Cma02g01557 231 Pfam YABBY protein 28 190 IPR006780 GO:0007275
Cma02g01557 231 PANTHER PROTEIN YABBY 6-RELATED 1 229 IPR006780 GO:0007275
Cma02g01557 231 MobiDBLite consensus disorder prediction 1 21 - -
Cma02g01557 231 PANTHER AXIAL REGULATOR YABBY 3 1 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01557 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101214748 401.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01557 Cma-Chr2:8833805 Cma11g00536 Cma-Chr11:2583470 1.43E-56 dispersed
Cma15g01149 Cma-Chr15:7308199 Cma02g01557 Cma-Chr2:8833805 2.82E-139 wgd
Cma02g01557 Cma-Chr2:8833805 Cma06g00763 Cma-Chr6:3875334 2.25E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01709 CCT 17 174 C2C2-YABBY Transcription Factor Family AT1G69180 55.7 9.2e-44 174.1
Cma02g01557 . 71 231 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 1.9e-43 172.9
Cma15g01149 CCT 81 236 C2C2-YABBY Transcription Factor Family AT2G45190 57.4 1.2e-42 170.2
Cma02g01297 . 1 176 C2C2-YABBY Transcription Factor Family AT1G08465 62.5 7.2e-52 201.1
Cma11g00536 . 40 214 C2C2-YABBY Transcription Factor Family AT1G08465 54.7 1.0e-42 170.6
Cma02g01557 . 27 219 C2C2-YABBY Transcription Factor Family AT1G08465 52.6 1.4e-42 170.2
Cma15g01149 CCT 37 224 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 1.8e-42 169.9
Cma10g00541 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 1.7e-37 153.3
Cma06g00763 CCT 19 187 C2C2-YABBY Transcription Factor Family AT1G08465 52.7 2.2e-37 152.9
Cma02g01557 . 38 230 C2C2-YABBY Transcription Factor Family AT4G00180 57.0 4.0e-51 198.7
Cma15g01149 CCT 48 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.0 2.0e-50 196.4
Cma04g01741 CST 1 160 C2C2-YABBY Transcription Factor Family AT1G23420 52.0 2.1e-36 150.2
Cma11g00536 . 42 210 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.6e-63 238.4
Cma05g01287 . 8 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.4 4.4e-61 231.5
Cma12g01202 . 8 168 C2C2-YABBY Transcription Factor Family AT2G26580 69.1 3.3e-56 215.3
Cma10g00541 . 7 165 C2C2-YABBY Transcription Factor Family AT2G26580 69.2 7.3e-56 214.2
Cma02g01297 . 1 176 C2C2-YABBY Transcription Factor Family AT2G26580 55.1 2.3e-46 182.6
Cma15g01149 CCT 37 196 C2C2-YABBY Transcription Factor Family AT2G26580 56.4 2.9e-44 175.6
Cma02g01557 . 29 191 C2C2-YABBY Transcription Factor Family AT2G26580 54.2 5.4e-43 171.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34538 PF04690 YABBY 4.80E-71 CL0114 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01557 Cma_Chr02 FPKM 0.0 0.0 0.0 0.0 6.547751 8.08802 6.93278 0.0 0.0 0.0