Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01565 ATGTACCACAGCACAAAAACAGAGCCGGATTTTGCTTATCTTGGCCCAATTCGCCGCCACTTGTTAGGCGAATCGGAGGCCGCCGGTCCCGTTTTCAACCGGACTGGTAGTTTCAGTAGCTTAATTCCATGTCTTGACGACAACTGGGGCGATTTGCCACTCAAAGTGGATGACTCTGAAGATATGCTTCTCGCTGCTGTTCTCGGGGATGCCGTCGGTGCTGGATGGGTGCCGTCGCTTGGAAGTTGCGATTTTGGGTTCTCGGCGGTGAAGTCGGAGCCGGAGATGATTCCTGTGAGCTATCCACCGGTGCAACCCAATGTGGCGGTGAGGCCGGCGGTGGTACCGCAAAAGGGGAAGCATTATAGAGGAGTGAGGCAACGGCCATGGGGGAAGTTTGCAGCGGAGATTCGGGACCCGGCGAAAAATGGCGCTAGAGTTTGGCTTGGAACCTATGAGACGGCGGAGGATGCAGCTCTAGCTTATGATCGGGCAGCCTATCGAATGAGAGGCTCGAGGGCTCTACTCAATTTCCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCGGTTCGAATCACGTCGAAGCGATCCTCGCCGGATCTTTCGTCTTCGCCAAAGCGGCGGAAGAAGGCCACCTCCGCCGCCGAAGATGGAGGAGTACGAGCGGCAAGCTTTACACGTGGAGGGCAGATGTTTGTCAGCCAATGCTAA 711 56.54 MYHSTKTEPDFAYLGPIRRHLLGESEAAGPVFNRTGSFSSLIPCLDDNWGDLPLKVDDSEDMLLAAVLGDAVGAGWVPSLGSCDFGFSAVKSEPEMIPVSYPPVQPNVAVRPAVVPQKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRITSKRSSPDLSSSPKRRKKATSAAEDGGVRAASFTRGGQMFVSQC 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8881341 8882051 + CmaCh02G015650.1 Cma02g01565 289316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01565 236 Gene3D AP2/ERF domain 120 182 IPR036955 GO:0003700|GO:0006355
Cma02g01565 236 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Cma02g01565 236 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Cma02g01565 236 CDD AP2 120 179 IPR001471 GO:0003700|GO:0006355
Cma02g01565 236 PANTHER DNA-BINDING DOMAIN 18 216 IPR044808 GO:0003700|GO:0009873
Cma02g01565 236 PANTHER BNAANNG21280D PROTEIN 18 216 - -
Cma02g01565 236 Pfam AP2 domain 121 171 IPR001471 GO:0003700|GO:0006355
Cma02g01565 236 MobiDBLite consensus disorder prediction 186 222 - -
Cma02g01565 236 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
Cma02g01565 236 SMART rav1_2 121 185 IPR001471 GO:0003700|GO:0006355
Cma02g01565 236 SUPERFAMILY DNA-binding domain 121 181 IPR016177 GO:0003677
Cma02g01565 236 MobiDBLite consensus disorder prediction 201 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01565 Cma-Chr2:8881341 Cma15g01099 Cma-Chr15:6993319 2.14E-112 dispersed
Cma16g01116 Cma-Chr16:8582031 Cma02g01565 Cma-Chr2:8881341 3.85E-94 wgd
Cma02g01565 Cma-Chr2:8881341 Cma06g00802 Cma-Chr6:4221673 4.17E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34539 PF00847 AP2 8.30E-15 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01565 K09286 - csv:101221583 375.555