Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01569 ATGGAAGCTAGAATTGTCTCAGAAAGTAAGGGCACAGTGACCTCCGAGAGAGGGCAATTTCGAGGAATCCGAATGGAGAATCCCTTTACTTTGAAGGTGGGTCAGATATTTACAGGGTTCGGCGTCGGTTGTGGCGTCGGTATCGGCGTTGGCCGCCCCATAAACATGGGTGCAATACCTGTCATGAATGAAGTAATGAGTGCCACGAGAGGTGCAACCGATGCACTTTCTGGTGTAACCAGGCATTTAAATAACTCTCTCAGGAAATTAGGAGCTAAGAACATCCAAGGTGGCATTGGGTGTGGAGTTGGTTTTGGCCATGGTTTCGGTGTCGGCCTAGCTATCAAGCCTTCATTTCTACAACAAGTTCAATCTTCTGTTATGCAAGCAATGGAGAAGATGGTGACAAAATTAGGTAATAATCCTAATCTTGCAATTAGTCAAAGCGCTGTACCAGTATCACTGCAATCTGCCATGAGCATAACAAATGCTTCGGCTAACAAGCATCCTGTTGCAAGCATTAGAGAGTTTGCAAAAGAAATGCCAGAAACTGCTCCACAAAACCTATCGAGTAGATCGTTTGAAACTCGAACCGAAAAGGTCGTCGACAGTTTCTTGCAGAATCCTGTTTTTAAAGGAGGGGATACTGAACTGCAGGATGAGGTTGGACGCCTACGGCTCGAAAACCGTCTCTTTCAAATGGTAATGATGCATCAGAAACTTATTCAAGAGCTCAAGGAGGAGAATAACAAGCTTCACCAAATACTAGTGGAAGACCTGAAAATACCACCCAGCAAGCTCCAAGCAAGTAACACAGGATCCAGAAACCGTTGGAGCTATGATTCTCACAAGAATTCCCGCCAGATTTCGCCGGCCGTTCAATCTCATCTCCAGCAGGTTTACCTTACTCTAGGTTGTGCTTTAGTTGCATCTGCGGCTGGAGCTTATCTTCATATGCTTTGGAACATTGGCGGTGTTCTCACAACACTTGCTAGTATCGGAAGCATCGCATGGCTAATGGTCACTCCTCCATATGAAGAGAAAAAGAGGGTTTCTATGTTAATGGGGGCTGCTCTTCTTCAAGGAGCTTCAATTGGTCCTTTGATCAGTGTGGCTATTGAGATTGATCCGAGTGTTCTGGTCAGTGCATTTGTGGGAACGGCAGTGGCCTTTGGTTGTTTTTCAGCAGCAGCCATGTTCGCAAGGCGCAGAGAATTCCTTTATCTGGGTGGCCTGCTTTCTTCTGGAATATCCATGTTACTCTGGCTGCGTTTTGCTTCCTCTATATTCGGTGGTTCCACTGCCATTTTCAAGTTTGAGTTGTATTTTGGACTTCTGCTGTTGGTGGGCTACGTGGTGGTTGACACTCAGAAAATAATCGAGAGGGCGCATCTTGGTGATGTGGATTACCTCGAAGCAAACCCGCCCCCGCAAGGGAAAGAAACACAGCGTCTCGGCATCACTGTGTTCGTTCCAAATAGATCGATGGCTTCATCTGTTGGAGGGATTTGGATGGACAAGGTTCTAGAGCTTGGACGAAGAGCCCTCTTCTACGTTAAAGTCCTCTCCGGCTATGAAGAGCGGCGGATTCGATCGTTTAGGTTGGAGCTCGAAAAGCGTCTCAAGAAGGCAGAGGAAAGAAAAGCTGCAATAAGAAAGATACCAGAACAGGCTATCTTAGGAGAAGTTCGACGCATGGTTGAGGAGATGCAGACTCTAAATAAAAAGTTGGAGGAAACCGAGTCTGCCATTGAAGAGTACTTCAAACCAATCGACAAAGAAGTAGAGACATTAATGAGAGTGCAACTTGAAGGAGAAGAGAGAACAATGAAGAACATGGTTAAAGTGATGCAGCAACAGGCTTTGTTAGAAAAAACTGAGGCAGATAAGGTAGGCACGCCTCTTTGGCGTAATGGACCTCCTGATAAACCAGTATTATGCAACGCATGTGGATCCCGATGGAGGACGAAGGGAACGCTTGCAAACTACACCCCTTTGCATGCTCGAGCTGATCCTGATGAATATGAAAATCACAGGGTTAAGAGCATTTCAATAAATAAAAACAAAGAAGTGAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGATCGATTGGGTGGACGATTCCCGATCAAAGTCAGGGTTACTATAGAGTAGTGGATGAAGATACAAGCAATAGATCCAGTTCTGGGTCAGCCATATCTAATCCTGAGAGCTGTGCTCATTTCAGCAGTGCTGATGCAAGTGACTTGACAGGTCCAGCTCAGTCGATAGTGTGGGAGGCCATGGTGCCTTCGAGAAAGAGGACCTGTGTGAATCGTCCAAAGCAATCCCCGGTCGAGAAACTAACTAAAGATCTATATGGTATTTTATGTGAGCAGAGATCTTCCTATTTCTCTGAAGCTTCTGAGGAGGATCTGCTTTTTGAGAGTGAAAAGCCTATGGTCTCTGTTGAGATAGGCCATGGAAGCATTCTCATTAGGCATCCGAGCTCAATAGCTCGAGAAGAGGAGTCTGAGGCTAGCTCGGTTTCAGTTGATAACAAGCAATACTTGGTAAATGAGATCTATTCCCCCCATTCTGCTACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATTTTCCACCATCTAGGATTGGAAAGATGATGAATCCTTCTGGATCAGGGGTACAACAAGTACAAATTAAAAGGGACGACTCTCATCATGAAAGTGCACAAATTCTTGGAAGCCATAACTCGCCCTTATGCGACGTAGATATAAATGACATTATAAACTTCGGAGAGTTTGTGAAACAACTTACAAATGAAGAACAACAGCAGTTAATGAAGTATCTACCACAGATCGATATTGCTGAGCTTCCAGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAAAGTTTAACTTCCTTCCAACAACTACTTAGGGAGGGTGTTTTCGACACTTCCTTCCTTGGGACAATGATCGAAGATTGCACGACTCTGAAAATGCTTGTACTATGTAACTCTTCGAAATCCAAATGGGTCGAACGCTATCATCAACTGAAGAAACGTAAAAATGATGGCGAAGGATCTTTTCTTTCCAACGCCAACACGTCTGTGTCGAGTAACTTCATGAATGTGAAGCGATTGCAGGAGAGCTACAATCAAAATGTTCCTGAGGTAAAGACTATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTAGAAGCTTGTTTGCCTTGCCTACTGATGGAAGCTTTGAATATTTACAATTCATCGAAAGAAGTTCGGATCAAGACCTATTGCTCGATGTGCGATCAAATAATTCATTCCCACAGGCCGAGCTCCTTCACCCGACCTCTCGTACGGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCGGTTCACTCAAATCTTGTACATCACTAA 3462 44.74 MEARIVSESKGTVTSERGQFRGIRMENPFTLKVGQIFTGFGVGCGVGIGVGRPINMGAIPVMNEVMSATRGATDALSGVTRHLNNSLRKLGAKNIQGGIGCGVGFGHGFGVGLAIKPSFLQQVQSSVMQAMEKMVTKLGNNPNLAISQSAVPVSLQSAMSITNASANKHPVASIREFAKEMPETAPQNLSSRSFETRTEKVVDSFLQNPVFKGGDTELQDEVGRLRLENRLFQMVMMHQKLIQELKEENNKLHQILVEDLKIPPSKLQASNTGSRNRWSYDSHKNSRQISPAVQSHLQQVYLTLGCALVASAAGAYLHMLWNIGGVLTTLASIGSIAWLMVTPPYEEKKRVSMLMGAALLQGASIGPLISVAIEIDPSVLVSAFVGTAVAFGCFSAAAMFARRREFLYLGGLLSSGISMLLWLRFASSIFGGSTAIFKFELYFGLLLLVGYVVVDTQKIIERAHLGDVDYLEANPPPQGKETQRLGITVFVPNRSMASSVGGIWMDKVLELGRRALFYVKVLSGYEERRIRSFRLELEKRLKKAEERKAAIRKIPEQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIDKEVETLMRVQLEGEERTMKNMVKVMQQQALLEKTEADKVGTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYENHRVKSISINKNKEVKLLKRKLQQADGSIGWTIPDQSQGYYRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWEAMVPSRKRTCVNRPKQSPVEKLTKDLYGILCEQRSSYFSEASEEDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQYLVNEIYSPHSATVLVCSENKGMNFPPSRIGKMMNPSGSGVQQVQIKRDDSHHESAQILGSHNSPLCDVDINDIINFGEFVKQLTNEEQQQLMKYLPQIDIAELPETLKSMFDSPYFKESLTSFQQLLREGVFDTSFLGTMIEDCTTLKMLVLCNSSKSKWVERYHQLKKRKNDGEGSFLSNANTSVSSNFMNVKRLQESYNQNVPEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPTDGSFEYLQFIERSSDQDLLLDVRSNNSFPQAELLHPTSRTGGRQASTCSSSVHSNLVHH 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8903251 8920933 + CmaCh02G015690.1 Cma02g01569 289320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01569 1153 Coils Coil 235 258 - -
Cma02g01569 1153 Pfam GATA zinc finger 633 659 IPR000679 GO:0006355|GO:0043565
Cma02g01569 1153 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 912 1024 IPR044867 -
Cma02g01569 1153 PANTHER OSJNBB0038F03.10 PROTEIN 632 1153 IPR044589 -
Cma02g01569 1153 PANTHER GATA TRANSCRIPTION FACTOR 26 632 1153 - -
Cma02g01569 1153 CDD ZnF_GATA 633 669 IPR000679 GO:0006355|GO:0043565
Cma02g01569 1153 CDD BI-1 287 471 - -
Cma02g01569 1153 SMART GATA_3 626 673 IPR000679 GO:0006355|GO:0043565
Cma02g01569 1153 MobiDBLite consensus disorder prediction 1128 1153 - -
Cma02g01569 1153 Pfam Inhibitor of apoptosis-promoting Bax1 294 467 IPR006214 -
Cma02g01569 1153 Gene3D - 906 992 IPR038108 -
Cma02g01569 1153 Coils Coil 534 554 - -
Cma02g01569 1153 Pfam Asx homology domain 900 993 IPR028020 -
Cma02g01569 1153 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 632 663 - -
Cma02g01569 1153 Gene3D - 628 698 IPR013088 GO:0006355|GO:0008270
Cma02g01569 1153 Coils Coil 560 583 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01569 Cma-Chr2:8903251 Cma19g00403 Cma-Chr19:4798855 0 dispersed
Cma19g00401 Cma-Chr19:4790085 Cma02g01569 Cma-Chr2:8903251 8.48E-69 transposed
Cma16g01108 Cma-Chr16:8519568 Cma02g01569 Cma-Chr2:8903251 0 wgd
Cma19g00400 Cma-Chr19:4773848 Cma02g01569 Cma-Chr2:8903251 0 wgd
Cma02g01569 Cma-Chr2:8903251 Cma06g00812 Cma-Chr6:4321699 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34540 PF01027 Bax1-I 2.10E-27 CL0453 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01569 - - csv:101215311 911.753