Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01569 ATGGAAGCTAGAATTGTCTCAGAAAGTAAGGGCACAGTGACCTCCGAGAGAGGGCAATTTCGAGGAATCCGAATGGAGAATCCCTTTACTTTGAAGGTGGGTCAGATATTTACAGGGTTCGGCGTCGGTTGTGGCGTCGGTATCGGCGTTGGCCGCCCCATAAACATGGGTGCAATACCTGTCATGAATGAAGTAATGAGTGCCACGAGAGGTGCAACCGATGCACTTTCTGGTGTAACCAGGCATTTAAATAACTCTCTCAGGAAATTAGGAGCTAAGAACATCCAAGGTGGCATTGGGTGTGGAGTTGGTTTTGGCCATGGTTTCGGTGTCGGCCTAGCTATCAAGCCTTCATTTCTACAACAAGTTCAATCTTCTGTTATGCAAGCAATGGAGAAGATGGTGACAAAATTAGGTAATAATCCTAATCTTGCAATTAGTCAAAGCGCTGTACCAGTATCACTGCAATCTGCCATGAGCATAACAAATGCTTCGGCTAACAAGCATCCTGTTGCAAGCATTAGAGAGTTTGCAAAAGAAATGCCAGAAACTGCTCCACAAAACCTATCGAGTAGATCGTTTGAAACTCGAACCGAAAAGGTCGTCGACAGTTTCTTGCAGAATCCTGTTTTTAAAGGAGGGGATACTGAACTGCAGGATGAGGTTGGACGCCTACGGCTCGAAAACCGTCTCTTTCAAATGGTAATGATGCATCAGAAACTTATTCAAGAGCTCAAGGAGGAGAATAACAAGCTTCACCAAATACTAGTGGAAGACCTGAAAATACCACCCAGCAAGCTCCAAGCAAGTAACACAGGATCCAGAAACCGTTGGAGCTATGATTCTCACAAGAATTCCCGCCAGATTTCGCCGGCCGTTCAATCTCATCTCCAGCAGGTTTACCTTACTCTAGGTTGTGCTTTAGTTGCATCTGCGGCTGGAGCTTATCTTCATATGCTTTGGAACATTGGCGGTGTTCTCACAACACTTGCTAGTATCGGAAGCATCGCATGGCTAATGGTCACTCCTCCATATGAAGAGAAAAAGAGGGTTTCTATGTTAATGGGGGCTGCTCTTCTTCAAGGAGCTTCAATTGGTCCTTTGATCAGTGTGGCTATTGAGATTGATCCGAGTGTTCTGGTCAGTGCATTTGTGGGAACGGCAGTGGCCTTTGGTTGTTTTTCAGCAGCAGCCATGTTCGCAAGGCGCAGAGAATTCCTTTATCTGGGTGGCCTGCTTTCTTCTGGAATATCCATGTTACTCTGGCTGCGTTTTGCTTCCTCTATATTCGGTGGTTCCACTGCCATTTTCAAGTTTGAGTTGTATTTTGGACTTCTGCTGTTGGTGGGCTACGTGGTGGTTGACACTCAGAAAATAATCGAGAGGGCGCATCTTGGTGATGTGGATTACCTCGAAGCAAACCCGCCCCCGCAAGGGAAAGAAACACAGCGTCTCGGCATCACTGTGTTCGTTCCAAATAGATCGATGGCTTCATCTGTTGGAGGGATTTGGATGGACAAGGTTCTAGAGCTTGGACGAAGAGCCCTCTTCTACGTTAAAGTCCTCTCCGGCTATGAAGAGCGGCGGATTCGATCGTTTAGGTTGGAGCTCGAAAAGCGTCTCAAGAAGGCAGAGGAAAGAAAAGCTGCAATAAGAAAGATACCAGAACAGGCTATCTTAGGAGAAGTTCGACGCATGGTTGAGGAGATGCAGACTCTAAATAAAAAGTTGGAGGAAACCGAGTCTGCCATTGAAGAGTACTTCAAACCAATCGACAAAGAAGTAGAGACATTAATGAGAGTGCAACTTGAAGGAGAAGAGAGAACAATGAAGAACATGGTTAAAGTGATGCAGCAACAGGCTTTGTTAGAAAAAACTGAGGCAGATAAGGTAGGCACGCCTCTTTGGCGTAATGGACCTCCTGATAAACCAGTATTATGCAACGCATGTGGATCCCGATGGAGGACGAAGGGAACGCTTGCAAACTACACCCCTTTGCATGCTCGAGCTGATCCTGATGAATATGAAAATCACAGGGTTAAGAGCATTTCAATAAATAAAAACAAAGAAGTGAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGATCGATTGGGTGGACGATTCCCGATCAAAGTCAGGGTTACTATAGAGTAGTGGATGAAGATACAAGCAATAGATCCAGTTCTGGGTCAGCCATATCTAATCCTGAGAGCTGTGCTCATTTCAGCAGTGCTGATGCAAGTGACTTGACAGGTCCAGCTCAGTCGATAGTGTGGGAGGCCATGGTGCCTTCGAGAAAGAGGACCTGTGTGAATCGTCCAAAGCAATCCCCGGTCGAGAAACTAACTAAAGATCTATATGGTATTTTATGTGAGCAGAGATCTTCCTATTTCTCTGAAGCTTCTGAGGAGGATCTGCTTTTTGAGAGTGAAAAGCCTATGGTCTCTGTTGAGATAGGCCATGGAAGCATTCTCATTAGGCATCCGAGCTCAATAGCTCGAGAAGAGGAGTCTGAGGCTAGCTCGGTTTCAGTTGATAACAAGCAATACTTGGTAAATGAGATCTATTCCCCCCATTCTGCTACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATTTTCCACCATCTAGGATTGGAAAGATGATGAATCCTTCTGGATCAGGGGTACAACAAGTACAAATTAAAAGGGACGACTCTCATCATGAAAGTGCACAAATTCTTGGAAGCCATAACTCGCCCTTATGCGACGTAGATATAAATGACATTATAAACTTCGGAGAGTTTGTGAAACAACTTACAAATGAAGAACAACAGCAGTTAATGAAGTATCTACCACAGATCGATATTGCTGAGCTTCCAGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAAAGTTTAACTTCCTTCCAACAACTACTTAGGGAGGGTGTTTTCGACACTTCCTTCCTTGGGACAATGATCGAAGATTGCACGACTCTGAAAATGCTTGTACTATGTAACTCTTCGAAATCCAAATGGGTCGAACGCTATCATCAACTGAAGAAACGTAAAAATGATGGCGAAGGATCTTTTCTTTCCAACGCCAACACGTCTGTGTCGAGTAACTTCATGAATGTGAAGCGATTGCAGGAGAGCTACAATCAAAATGTTCCTGAGGTAAAGACTATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTAGAAGCTTGTTTGCCTTGCCTACTGATGGAAGCTTTGAATATTTACAATTCATCGAAAGAAGTTCGGATCAAGACCTATTGCTCGATGTGCGATCAAATAATTCATTCCCACAGGCCGAGCTCCTTCACCCGACCTCTCGTACGGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCGGTTCACTCAAATCTTGTACATCACTAA 3462 44.74 MEARIVSESKGTVTSERGQFRGIRMENPFTLKVGQIFTGFGVGCGVGIGVGRPINMGAIPVMNEVMSATRGATDALSGVTRHLNNSLRKLGAKNIQGGIGCGVGFGHGFGVGLAIKPSFLQQVQSSVMQAMEKMVTKLGNNPNLAISQSAVPVSLQSAMSITNASANKHPVASIREFAKEMPETAPQNLSSRSFETRTEKVVDSFLQNPVFKGGDTELQDEVGRLRLENRLFQMVMMHQKLIQELKEENNKLHQILVEDLKIPPSKLQASNTGSRNRWSYDSHKNSRQISPAVQSHLQQVYLTLGCALVASAAGAYLHMLWNIGGVLTTLASIGSIAWLMVTPPYEEKKRVSMLMGAALLQGASIGPLISVAIEIDPSVLVSAFVGTAVAFGCFSAAAMFARRREFLYLGGLLSSGISMLLWLRFASSIFGGSTAIFKFELYFGLLLLVGYVVVDTQKIIERAHLGDVDYLEANPPPQGKETQRLGITVFVPNRSMASSVGGIWMDKVLELGRRALFYVKVLSGYEERRIRSFRLELEKRLKKAEERKAAIRKIPEQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIDKEVETLMRVQLEGEERTMKNMVKVMQQQALLEKTEADKVGTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYENHRVKSISINKNKEVKLLKRKLQQADGSIGWTIPDQSQGYYRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWEAMVPSRKRTCVNRPKQSPVEKLTKDLYGILCEQRSSYFSEASEEDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQYLVNEIYSPHSATVLVCSENKGMNFPPSRIGKMMNPSGSGVQQVQIKRDDSHHESAQILGSHNSPLCDVDINDIINFGEFVKQLTNEEQQQLMKYLPQIDIAELPETLKSMFDSPYFKESLTSFQQLLREGVFDTSFLGTMIEDCTTLKMLVLCNSSKSKWVERYHQLKKRKNDGEGSFLSNANTSVSSNFMNVKRLQESYNQNVPEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPTDGSFEYLQFIERSSDQDLLLDVRSNNSFPQAELLHPTSRTGGRQASTCSSSVHSNLVHH 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8903251 8920933 + CmaCh02G015690.1 Cma02g01569 289320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01569 1153 Coils Coil 235 258 - -
Cma02g01569 1153 Pfam GATA zinc finger 633 659 IPR000679 GO:0006355|GO:0043565
Cma02g01569 1153 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 912 1024 IPR044867 -
Cma02g01569 1153 PANTHER OSJNBB0038F03.10 PROTEIN 632 1153 IPR044589 -
Cma02g01569 1153 PANTHER GATA TRANSCRIPTION FACTOR 26 632 1153 - -
Cma02g01569 1153 CDD ZnF_GATA 633 669 IPR000679 GO:0006355|GO:0043565
Cma02g01569 1153 CDD BI-1 287 471 - -
Cma02g01569 1153 SMART GATA_3 626 673 IPR000679 GO:0006355|GO:0043565
Cma02g01569 1153 MobiDBLite consensus disorder prediction 1128 1153 - -
Cma02g01569 1153 Pfam Inhibitor of apoptosis-promoting Bax1 294 467 IPR006214 -
Cma02g01569 1153 Gene3D - 906 992 IPR038108 -
Cma02g01569 1153 Coils Coil 534 554 - -
Cma02g01569 1153 Pfam Asx homology domain 900 993 IPR028020 -
Cma02g01569 1153 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 632 663 - -
Cma02g01569 1153 Gene3D - 628 698 IPR013088 GO:0006355|GO:0008270
Cma02g01569 1153 Coils Coil 560 583 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01569 - - - csv:101215311 911.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01569 Cma-Chr2:8903251 Cma19g00403 Cma-Chr19:4798855 0 dispersed
Cma19g00401 Cma-Chr19:4790085 Cma02g01569 Cma-Chr2:8903251 8.48E-69 transposed
Cma16g01108 Cma-Chr16:8519568 Cma02g01569 Cma-Chr2:8903251 0 wgd
Cma19g00400 Cma-Chr19:4773848 Cma02g01569 Cma-Chr2:8903251 0 wgd
Cma02g01569 Cma-Chr2:8903251 Cma06g00812 Cma-Chr6:4321699 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00584 . 76 341 C2C2-Gata Transcription Factor Family AT5G25830 55.3 2.0e-65 246.9
Cma16g00644 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 50.8 1.3e-62 237.7
Cma03g00704 CCT,ECH 99 282 C2C2-Gata Transcription Factor Family AT5G66320 50.5 1.3e-43 174.5
Cma06g00812 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.8 3.9e-132 469.2
Cma16g01108 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 51.4 4.3e-131 465.7
Cma19g00400 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 51.6 2.0e-128 456.8
Cma02g01569 . 633 1129 C2C2-Gata Transcription Factor Family AT4G17570 51.6 6.1e-125 445.3
Cma06g00812 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.8 9.8e-114 407.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34540 PF01027 Bax1-I 2.10E-27 CL0453 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01569 Cma_Chr02 FPKM 8.871012 10.53334 8.662182 8.087802 10.811284 8.994926 10.010717 28.455015 29.076174 27.88818