Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01577 ATGGATTTCTCCGAGCAAGATGTAGATATATTCGGTGAAGAGTTGGAAAACGAAGGCAACAACGACAACGACAACGATAACCATGACCGTGATGCTGCTCGGTCCTCCTCTCAATCTTCGTCCTCTTCGTCTTCTTCGTCTTCTTCGGATTCTTCATCGTCCAATGCTAGCGATGGAGGCGACAGTAGTAGTGGAGGTAGTGGGAGTGCGAGTAGTGCTGAAGAAGAAGACGAGGAAAAAGGCGAAGAAGTTCAGCAGAATCAAGATAGGGGGCATCTGGGGTATGAGGATAGAGATCTGTTTGGTTCTGATAATGAGGAATATTGTAAAACACTTGCTGCTAGTCCTTATCCTGTGCCAGTCTTACCTGCGGCAAGGAGTAATAACAACCATGCTAGAGGAACATTTGGGCGAGGTCGTTGGGGGAATGATAGAGGGTCAGGCCTCCTTCCACGGCCTGGACCATTTCCCCAAAGGCATGGTTTTGGTGGCTATGGATCGAAGTTTTCAAATGGGCGTCATGATGAACGCTTCGTCTCAGACATGAAGCTTACTAAAAGTGAAGAAACACTGGCAAGGAAGTGTATTGCTTTTCAGGAGCCTTGTGAACTTGCTTGCTATAGTCGTGTTGAAGGTGGAGATGTGTACTTTGATGATCGCAGCTTGAGACTGTTTAAGCGCTTCATTACTGAAGACATTGGAGCTGATTTGAACGAAGGTTTTGACACTTTTATTGAGAAGAAAGACCTAGGTTCTCAGGGTTTTGGTGACCTCCTTGCTTGCATTAGGGACAAAAACATTCCTCTTCAAAACATTCATTTTGTGACTTTCCGTAACAATCTTAACAAGATATTGGCTACTGCTTATATTCGTCATGAGCCTTGGGAAATGGGTGTGCATAAAAGAAATGGTGTTGTGTACCTTGATGTGCATAAATTACCAGAAAGACCACAAAGTGAATTGGAGCGTCGAAGGTGCTATTGGGGTTACTGTTTTGAGAGCCTTGCGACGGAGGACCCAAGAAGAGGTGATGGAGAAGGGATCCATCATGTAGATGCAAATGCTGAATATTGTGCTGTGATCAAAACCAAATTAGGTGCCCATCGCATCCTGATGGGTGCTGAAATGGATTGCTGTGATTCAACTGATGAGGGAAGGAGGTTTTATGTTGAACTAAAAACAAGTCGTGAGTTGGATCAGCGTACCGAAGAAAAATATGAGAGAGAGAAATTGCTTAAATTCTGGATACAATCATTCTTAGCTGGGGTACCATATATCATTATCGGGTTCAGGAATGATGATGGCCAACTAGTCCGCACAGAAAGATTGAGAACTAAAGACATAACACAGAGAGTGAAAATGAAGAACTATTGGCAGGGAGGAGTCTGTCTGGCCTTTGCTGATGAAGTGTTATGCTGGCTTTATGGAACAGTCAAAGAAAATGAAGATTACATATTGCAGTTTGCAAATCCTTTCACTCGTTTAGAGCTTCTTCAAGCCTCCTCGTGCCCAGACGCTATCACTCATCACATGGATCTATTGTAG 1545 43.95 MDFSEQDVDIFGEELENEGNNDNDNDNHDRDAARSSSQSSSSSSSSSSSDSSSSNASDGGDSSSGGSGSASSAEEEDEEKGEEVQQNQDRGHLGYEDRDLFGSDNEEYCKTLAASPYPVPVLPAARSNNNHARGTFGRGRWGNDRGSGLLPRPGPFPQRHGFGGYGSKFSNGRHDERFVSDMKLTKSEETLARKCIAFQEPCELACYSRVEGGDVYFDDRSLRLFKRFITEDIGADLNEGFDTFIEKKDLGSQGFGDLLACIRDKNIPLQNIHFVTFRNNLNKILATAYIRHEPWEMGVHKRNGVVYLDVHKLPERPQSELERRRCYWGYCFESLATEDPRRGDGEGIHHVDANAEYCAVIKTKLGAHRILMGAEMDCCDSTDEGRRFYVELKTSRELDQRTEEKYEREKLLKFWIQSFLAGVPYIIIGFRNDDGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFANPFTRLELLQASSCPDAITHHMDLL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8955716 8961764 + CmaCh02G015770.1 Cma02g01577 289328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01577 514 MobiDBLite consensus disorder prediction 83 101 - -
Cma02g01577 514 MobiDBLite consensus disorder prediction 34 71 - -
Cma02g01577 514 PANTHER DOM-3 RELATED 29 514 IPR039039 -
Cma02g01577 514 MobiDBLite consensus disorder prediction 1 20 - -
Cma02g01577 514 MobiDBLite consensus disorder prediction 1 101 - -
Cma02g01577 514 Pfam RAI1 like PD-(D/E)XK nuclease 376 438 IPR013961 -
Cma02g01577 514 MobiDBLite consensus disorder prediction 124 144 - -
Cma02g01577 514 PANTHER BNAC01G10220D PROTEIN 29 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01577 K14845 RAI1, DOM3Z; RAT1-interacting protein - csv:101211450 868.611
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g568 . . . . . . . . . . Cma02g01577 . Car02g01341 . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00031 . . . . . . . . . . Cmo02g01619 . . . . . . . . . . . . . . . . . . . . . . Csa03g04670 . Cme04g00041
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008291 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 3 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01577 Cma_Chr02 FPKM 33.729736 36.456215 33.93705 32.870079 28.426514 31.84763 28.28616 43.699783 43.354874 45.515621