Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01578 ATGTCTAAATTTGTTCATCCCAAACGAGTAGCCTCATGGTGCAAGCAATTCCTCTGCTTCTCAATCCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTACGCTCGATTCCCTCTTTCTCCCCATGTTTTTCCCACAGATTTAGCCCCTTCTCCCCCTCTCTTTCCGCCCTACAACCGGCGGCGATGCACCGTGACCGAGGTGCGCTTGCCGGCGCTTCCAAGTTGGAGGTCACTCCTCTCGATCGGAAGCGTATCAACGAGGCTCTCGATAAGCAGCTCGAGCGATCCTCCCCCTCCACTTCTCGCGCGGTCCTTAACGGAAAGGATAAGCCCTCCGCTGCTCAGTCGGTGTTAATGGTGAAGCCGCCGTCTGATCAGAGAGACTCTCGTCCTTCGTCTCTATCTAAGACCAACTGTTCTGAAGAGTCTGAGACTGACAGTGAAGATTCAGATGTCAGTGGATCTGATGGTGATGATACATCTTGGATTTCGTGGTTTTGTAATCTGCGAGGAAATGAGTTCTTTTGTGAAGTGGATGATGACTATATACAAGACGACTTCAACCTTTGTGGGTTAAGCAGCCAAGTTCCATACTATGATTATGCTCTTGATTTGATTTTGGATGTTGAGTCCTCTAATGGTGATATGTTTACAGAGGAACAGAATGAACTAATTGAATCTGCAGCTGAAATGCTTTATGGTCTAATTCATGCGAGATACATATTGACAAGTAAAGGCATGGCTGCTATGCTGGACAAGTTCAAGAATTATGACTTTGGGAGATGCCCTAGAGTTTACTGCTGTGGACAGCCCTGTCTTCCTGTTGGTCAATCAGATATTCCTAGAGCAAGCACCGTCAAAATATACTGTCCAAGATGTGAGGATGTTTATTATCCTCGATCGAAATATCAAGGTAACATTGATGGAGCTTACTTCGGAACTACATTTTCTCACCTCTTTCTGATGACATATGGACACCTTAAGCCGCAAAAAGCCATTCAGAGCTACGTTCCGAGAGTGTTTGGATTCAAGATCCACAAGCCATGA 1056 45.83 MSKFVHPKRVASWCKQFLCFSILPLLLLLLLLLLLLRSIPSFSPCFSHRFSPFSPSLSALQPAAMHRDRGALAGASKLEVTPLDRKRINEALDKQLERSSPSTSRAVLNGKDKPSAAQSVLMVKPPSDQRDSRPSSLSKTNCSEESETDSEDSDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSNGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKFKNYDFGRCPRVYCCGQPCLPVGQSDIPRASTVKIYCPRCEDVYYPRSKYQGNIDGAYFGTTFSHLFLMTYGHLKPQKAIQSYVPRVFGFKIHKP 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8961840 8966659 + CmaCh02G015780.1 Cma02g01578 289329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01578 351 MobiDBLite consensus disorder prediction 129 143 - -
Cma02g01578 351 PANTHER CASEIN KINASE II SUBUNIT BETA 65 350 - -
Cma02g01578 351 PRINTS Casein kinase II regulatory subunit family signature 236 257 IPR000704 GO:0005956|GO:0019887
Cma02g01578 351 PRINTS Casein kinase II regulatory subunit family signature 311 328 IPR000704 GO:0005956|GO:0019887
Cma02g01578 351 PRINTS Casein kinase II regulatory subunit family signature 181 195 IPR000704 GO:0005956|GO:0019887
Cma02g01578 351 PRINTS Casein kinase II regulatory subunit family signature 261 282 IPR000704 GO:0005956|GO:0019887
Cma02g01578 351 PRINTS Casein kinase II regulatory subunit family signature 164 180 IPR000704 GO:0005956|GO:0019887
Cma02g01578 351 PRINTS Casein kinase II regulatory subunit family signature 283 304 IPR000704 GO:0005956|GO:0019887
Cma02g01578 351 ProSitePatterns Casein kinase II regulatory subunit signature. 265 296 IPR000704 GO:0005956|GO:0019887
Cma02g01578 351 MobiDBLite consensus disorder prediction 118 160 - -
Cma02g01578 351 SMART CK_II_beta_2 164 347 IPR000704 GO:0005956|GO:0019887
Cma02g01578 351 SUPERFAMILY Casein kinase II beta subunit 162 350 IPR035991 GO:0005956|GO:0019887
Cma02g01578 351 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 157 261 IPR016149 GO:0005956|GO:0019887
Cma02g01578 351 Gene3D - 262 336 - -
Cma02g01578 351 PANTHER CASEIN KINASE II SUBUNIT BETA 65 350 IPR000704 GO:0005956|GO:0019887
Cma02g01578 351 Pfam Casein kinase II regulatory subunit 164 347 IPR000704 GO:0005956|GO:0019887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01578 K03115 CSNK2B; casein kinase II subunit beta - csv:101211694 512.686
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01578 Cma-Chr2:8961840 Cma08g01006 Cma-Chr8:6314744 2.54E-158 dispersed
Cma19g00389 Cma-Chr19:4575151 Cma02g01578 Cma-Chr2:8961840 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g570 . . . . . . . . . . Cma02g01578 . Car02g01342 . . . Cpe05g00212 . . . . . . . . . . . . . . Cone8ag0436 Cone12ag0421 Cone6ag0629 Cone9ag0632 . . Chy04g00032 . . Blo19g00259 . . . . . . Sed01g4060 . Cmo19g00397 . . . . . . Bhi05g00570 Tan07g1906 Cmetu04g2898 . Hepe06g1721 . Lcy12g1882 Cla09g01203 Cam09g1270 Cec09g1284 Cco09g1318 . . Cre09g1230 . Csa03g04669 . Cme04g00042
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000972 4 4 2 2 3 2 4 2 2 2 2 2 3 2 2 3 2 6 4 2 2 3 2 2 2 2 2 10 2 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01578 Cma_Chr02 FPKM 28.937645 26.456034 34.64061 34.387234 31.69952 31.709017 33.815781 48.982967 47.793354 50.014542