Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01579 ATGGTGGACTCCGTAGCGAAGAGAACGAGGCTGAGGCGAGCAATGGCTAGAGAGGAGCATTTGGAGCAGAGGAAGAAACGTAGGAAGAAGAGCAGGGATTCCGCTAGTAACAATGTTCGAGGTCAATTTTCGAGCGGAGGATTTCGTGATCGAGGCAAGTGGGTTAATGCTTCTGAAAATTGTAGTGTTAATCGTCGAATGGAGGTAGAAAAAGTGGCTATAAGTGTTGATAGCAAGGAGGAGAGCGTCGAGGAGATTGATGCTGTTACGTTTGGTAGAGAAGGTGGGGATTCGGTCACATTTGTAGGTTCTGAGAGTTCGGGGTTGAAGAATGTGAAAGGATTTGGTATGAAAGGGAATGTTGATGTAATCGATTTAGAGAATGAGGTGATTTTTCTTGACGAGGAGGAGGGTTTTGATTCTGTGAATTCGAACTGTTCGATTTCTAAGTCAGCTGCTGCTGCTGCGAAGGGCGGGGATTTCACTTGCCTTGATTTGGATAACGAAGATGGTAGTAGTGGCTTGATTTCATCTGGCAAGGGAAAGGGTGCTTTAGAGATATCTCCAAATAAAAGCATGGGAGAAAGTAATTGCTTGAATTCTAATGGCTTTGAGAGTGGAGGTTGCTCGTACAGCACTGAGCCCGCGTGTTGTCCTGATGATGCTGTAGATGAGTCCACTGAATCGGGAGCATCATCAAACGAAGAGAAGTCTGATGAATTGAGTGACGAGAATTATGAATTAGAAGAATCAGAAGAGTCAATTTCAGAGTCCTCTAGTAGTTCAGAAAACGTGGAAAATAATGGAAGTTGCTGTGTAGAAGCAGGAAGTAGAAGGGAAAGAATGGAAAGCAGGAAGAGGATGAAAGTTATTGAAGGTGGACTAAAGAGGTGTAAAGCTTATGGATTGGACATATTGTCTGATCTTGACAAGGACGGTCATAACTTTGATTATGAAAATGGAAATGCTAAGGTTCGTGAGCAGCAGGTGAATTGTGTTGCACGAAGAACCCGTTCACGCTACGTTTGGAAGGTTAAAAAGATAAATAATGATCTTGGAACTGTCAGTCAGCCACTCTGTATTGATGAGGAAGGGTCAGACTTTGAGGGCAATGAGAAAGAAATACATTCTTCGTCAAGGCATGACAGTGGAGATTCTTGTGATAGTGACAATGACAGCGATAACGATAGCGATAGCGATAGCGATAGTGATCGTGGTCATGGTCGAGCTCGTGATCGTGATCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTCGAGGTCGTGATAGTGTTCGTGATCATGATCGTGATCGTACTGCTGATGATGGAATTTACAAGCCAAGAGCCTGGAGTAGTGGTATTAAAAAGAGAACTCAGTTCAACAATCAAAGTGATGATGTTATCTTATCAGAAAAAAATGATGATCATACAAACAAGGTTGAGAATTTTCATGGGGGTAGTAAACTTTGGGATAGTAAAAGTTCTCCTGAAACAGATAAACACAAACGGAGTGAAGACTGTGAAGATTTTCAGAAGGTTCACCCAAAGAATTTCCATGAGTTTGATAGTATTATCAAAACAAAAGGCCACAGTGCCTGCAAAAATCTTGATGTTTTCAATATTCTTGTAGATTCCATAGTTGCAGACAAAGAACTGCCTTCAGATGATTTAGATTCTCGTACAAGTCCACTCTCCCATTGTCCTGAGATGCCTCTTCCTTTGAAGTTCAATTTTAGATTTGAGGAACCACATCTTCCAGAGAGGTTAGAGGAAGAAAAAGAAATGGATAAACTGTGGGCTGAGCTTGACTTTGCTCTCAGATCCAGCGAGATTGGTGCGGTGGATTCTATTACAGTTGAAAATGAAGATGCCTTTCTTTCAAAGCTTGACCAAGCGGATCTTTGTCTTCGTGGGGATCATCAGCTGATACTTGATGAACAAATCGGACTTAGATGCACACGTTGTTCATATGTCAAATTGGAAATCAAAGATATTCTACCTTCTTTTGGTACAAATCCATCTGGAAAGTCGCATAAGAGGGAATCTGGCTCATTTGAGCACGTTAGATTTGATGACCTTCAACAGGAATTTGATCGTGACCCCCATGACATATCTGATTCACAATATCATGTTGGACGTACAGTGTGGGATATCATTCCCGGTATAAGGGAGAGCATGTATCCACATCAGCGTGAAGGGTTTGAATTTATTTGGGAAAATATAGCTGGAGGAATTTATCTTGATGAGTTAAGAAACATAAACAGCTCAAACAATGGGAGTGGATGCATTGTATCACATGCTCCTGGAACAGGAAAAACTCGTCTAACAATTGTTTTTCTTCAGACATACATGGAACTAAATCCAACATGCCGGCCTATAATTATTGCACCTAGCAGCATGCTCCTTACCTGGGAAGAGGAGTTTTTGAAGTGGAAGGTTGGCATTCCCTTTCATAACCTGAATAAGCGAGACTTCACTCTCAAGGAGAATTTTTCAGCTCTTAAGTTCTTGATGCAAGCTTCTCCATCAGGACAAACTGTGGAGAATGTACGGCTTGTAAAACTGCTTTCCTGGAAAAAGGAGAAAAGCATTTTGGGAGTTAGTTACAGATTGTTTGAGAGACTTGCAGGAGTTCGGAAGAATACGAAATGTGATAAAGTAAGGAATGTCCTTTTGGAGCTTCCTGGTCTTGTTGTCTTTGATGAAGGGCACATACCACGCAACGATGATAGTCTTATTTGGATGGCCTTGTCTAAAATTAAAACAGAAAGGCGCATCATTCTCTCCGGAACACCATTCCAGAATAATTTTACTGAGTTTTCTAATACACTAAGGTTGGCGAGGCCAAACTTTGCAGATGCATGTAAGTCTGGAGGTAATGAATGCCCAGATAAGAAGCGTGGACGCCCGAAACATATCTCAAGAGGAAAATGGGACCTTTTGATTAGTTCCATCGACAGAACTGAAAACTTGCCGGAAAGTCCGGAATTGAGAGAAATCAGAGCCTTGATCAGTCCGTTTGTGCATGTATACAGGGGCAACATCCTACGTGAGAAGCTTCCGGGGTTGAGGAAATCTATAGTTATATTACGGCCAGCAGAGCTGCAGAAAAGTTATCTTGAAAGCATAGTAGGGAACAATTCTTTTGAGGTGGAATATGCTGAGTCCTTGATATCCGTACACCCTTCCCTGAAACTGAAATGTGATAAAGAAGATTTTGATATCGACAAGGAAATGTTAGAGAAGGTTAGATTGAATCCTGAACTAGGAGTGAAAATACAGTTTCTCCTCGAAATTATACGTCTGAGTGAAGCTTTGAATGAGAAAGTTTTGGTTTTCAGCCAATACATTGAACCATTGTCCTTTATAGATGAGAATCTTAAGTTTCATTTTAATTGGAATGAAGGGGTAGAGGTATTTCATATGGATGGAAAGCGTGATATAAAGAAGCGACAAGCATTGATAAATACATTTAACGATCCGACAAGTGAGGTTCGGGTGTTGCTTGCATCAACAAAGGCTTGCTCAGAAGGTATAAACCTTGTTGGGGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAATCCTTCAGTGGAAAGGCAAGCTGTATGCCGTGCATTTAGACTTGGCCAGAAAAAAGTTGTTTATGTGTATCATCTCATTGCCTCTGGGACAAGGGAAGAGGAAAAATACAGTCGACAAATGAAAAAAGATCGGTTGTCTGAGTTAGTTTTCTCTCCTGAACAGGGCAGTAATCAAGTAAAAGTATCATCCACAGATCTGGATGACAGAATTTTGGAAGCAGTTCTTCAACATGAAAAGCTTAAAAATATATTCGAAAAGATAGCGTACCAATCAAAGCAGTCCAGCATGAATGGGAATTTTGGCCCGGCAGACTAG 3897 41.44 MVDSVAKRTRLRRAMAREEHLEQRKKRRKKSRDSASNNVRGQFSSGGFRDRGKWVNASENCSVNRRMEVEKVAISVDSKEESVEEIDAVTFGREGGDSVTFVGSESSGLKNVKGFGMKGNVDVIDLENEVIFLDEEEGFDSVNSNCSISKSAAAAAKGGDFTCLDLDNEDGSSGLISSGKGKGALEISPNKSMGESNCLNSNGFESGGCSYSTEPACCPDDAVDESTESGASSNEEKSDELSDENYELEESEESISESSSSSENVENNGSCCVEAGSRRERMESRKRMKVIEGGLKRCKAYGLDILSDLDKDGHNFDYENGNAKVREQQVNCVARRTRSRYVWKVKKINNDLGTVSQPLCIDEEGSDFEGNEKEIHSSSRHDSGDSCDSDNDSDNDSDSDSDSDRGHGRARDRDRGRGRGRGRGRGRDSVRDHDRDRTADDGIYKPRAWSSGIKKRTQFNNQSDDVILSEKNDDHTNKVENFHGGSKLWDSKSSPETDKHKRSEDCEDFQKVHPKNFHEFDSIIKTKGHSACKNLDVFNILVDSIVADKELPSDDLDSRTSPLSHCPEMPLPLKFNFRFEEPHLPERLEEEKEMDKLWAELDFALRSSEIGAVDSITVENEDAFLSKLDQADLCLRGDHQLILDEQIGLRCTRCSYVKLEIKDILPSFGTNPSGKSHKRESGSFEHVRFDDLQQEFDRDPHDISDSQYHVGRTVWDIIPGIRESMYPHQREGFEFIWENIAGGIYLDELRNINSSNNGSGCIVSHAPGTGKTRLTIVFLQTYMELNPTCRPIIIAPSSMLLTWEEEFLKWKVGIPFHNLNKRDFTLKENFSALKFLMQASPSGQTVENVRLVKLLSWKKEKSILGVSYRLFERLAGVRKNTKCDKVRNVLLELPGLVVFDEGHIPRNDDSLIWMALSKIKTERRIILSGTPFQNNFTEFSNTLRLARPNFADACKSGGNECPDKKRGRPKHISRGKWDLLISSIDRTENLPESPELREIRALISPFVHVYRGNILREKLPGLRKSIVILRPAELQKSYLESIVGNNSFEVEYAESLISVHPSLKLKCDKEDFDIDKEMLEKVRLNPELGVKIQFLLEIIRLSEALNEKVLVFSQYIEPLSFIDENLKFHFNWNEGVEVFHMDGKRDIKKRQALINTFNDPTSEVRVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAVCRAFRLGQKKVVYVYHLIASGTREEEKYSRQMKKDRLSELVFSPEQGSNQVKVSSTDLDDRILEAVLQHEKLKNIFEKIAYQSKQSSMNGNFGPAD 1298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8969120 8973857 - CmaCh02G015790.1 Cma02g01579 289330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01579 1298 SMART ultradead3 721 967 IPR014001 -
Cma02g01579 1298 MobiDBLite consensus disorder prediction 492 507 - -
Cma02g01579 1298 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1097 1261 IPR001650 -
Cma02g01579 1298 Pfam SNF2-related domain 753 953 IPR000330 GO:0005524|GO:0140658
Cma02g01579 1298 MobiDBLite consensus disorder prediction 1 48 - -
Cma02g01579 1298 Gene3D - 698 976 IPR038718 -
Cma02g01579 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 895 1247 IPR027417 -
Cma02g01579 1298 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 1295 IPR044567 GO:0080188
Cma02g01579 1298 MobiDBLite consensus disorder prediction 363 445 - -
Cma02g01579 1298 MobiDBLite consensus disorder prediction 369 388 - -
Cma02g01579 1298 Coils Coil 234 268 - -
Cma02g01579 1298 MobiDBLite consensus disorder prediction 400 443 - -
Cma02g01579 1298 MobiDBLite consensus disorder prediction 470 507 - -
Cma02g01579 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 693 952 IPR027417 -
Cma02g01579 1298 Gene3D - 1020 1293 IPR027417 -
Cma02g01579 1298 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 3 1295 - -
Cma02g01579 1298 MobiDBLite consensus disorder prediction 240 256 - -
Cma02g01579 1298 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 752 949 IPR014001 -
Cma02g01579 1298 MobiDBLite consensus disorder prediction 1 22 - -
Cma02g01579 1298 SMART helicmild6 1124 1209 IPR001650 -
Cma02g01579 1298 CDD SF2_C_SNF 1088 1220 - -
Cma02g01579 1298 MobiDBLite consensus disorder prediction 257 271 - -
Cma02g01579 1298 MobiDBLite consensus disorder prediction 220 285 - -
Cma02g01579 1298 Pfam Helicase conserved C-terminal domain 1091 1209 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01579 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:105435045 1570.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00375 Cma-Chr2:1886998 Cma02g01579 Cma-Chr2:8969120 1.03E-89 dispersed
Cma02g01579 Cma-Chr2:8969120 Cma20g00824 Cma-Chr20:3920382 5.09E-85 dispersed
Cma04g00128 Cma-Chr4:601173 Cma02g01579 Cma-Chr2:8969120 9.68E-103 transposed
Cma19g00387 Cma-Chr19:4566277 Cma02g01579 Cma-Chr2:8969120 3.24E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34541 PF00176 SNF2_N 1.80E-17 CL0023 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01579 Cma_Chr02 FPKM 0.0 0.0 0.0 0.088505 0.186004 0.169788 0.176004 0.068395 0.031058 0.091888