Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01585 ATGAAAACCCATTTCCCAGCATCGATTCTAGTGCTTTTTTCTCTTCTAACCCTCTTCCAATTTGGTTTCTCTTTGGACATTGTTCAACGCTCCTGCAAACTAGCTGCAAAAAGAGACCCATACGTTGATTACAAGCTCTGTGTTAAGAGCCTACGAGCCAACCCCAGTTCAAAAGATGCAACGTTCAAGGATTTAGTCCTGATTTCGATCGAGCAATCGAAGGCCAATGCGACGGCAATTGGGTCGGAGATTACGGGGCTCTTAAAGGGCGGTGGGAAATGGGGGAAGTATTCGTCGAGTTGTTTGGAGAGCTGTTTGGAGGTTTATTCTGAGGCTGTTTCGGATTTGAAATTGGGTTTGGTTGCTGTCAAAATGGGGGATTATGAAACTGCGAATACAGAGGTGAGTGCCGCCATGGATGCACCTTTGACTTGTGAAAATGGGTATAATGAGAAGGATGGGGAAGTTTCTCCTTTGACAGAGAAGAACGAGATCTCTGCGGGTATGGCACCGACGTCAGCTCTGGCGAAGTACAAGCTGGTCTTTCTTGGAGACCAGTCTGTTGGAAAAACCAGTATCATTACACGCTTCATGTACGACAAATTCGATAATACGTATCAGGCTACAATTGGTATCGATTTTCTCTCAAAAACTATGTATCTTGAAGATCGCACTGTTCGGCTGCAGTTGTGGGACACTGCTGGACAGGAAAGATTCAGAAGTTTAATACCAAGCTATATCAGGGACTCATCTGTCGCGGTCATCGTTTATGATGTTGCAAGCCGGCAGACTTTCGTAAACACTTCAAAATGGATTGAGGAGGTGCGCACTGAGAGGGGCAGTGATGTTATTATAGTGCTTGTTGGGAACAAAACGGACCTTGTGGAGAAGAGGCAAGTCTCCGTAGAGGAAGGAGAAGCCAAAGCCCGTGAACTAAATGTCATGTTTATCGAAACAAGTGCAAAAGCTGGATTCAATATCAAGGCTCTATTCCGAAAAATTGCTGCAGCATTGCCCGGAATGGAAACTCTCTCTTCGACAAAGCAAGAAGACATGGTTGATGTCAACCTGAAGTCAACGGGCAGTGGTGCTGCACAATCCCAGCCGCAGTCCGGTGGATGCGCCTGCTAA 1131 46.15 MKTHFPASILVLFSLLTLFQFGFSLDIVQRSCKLAAKRDPYVDYKLCVKSLRANPSSKDATFKDLVLISIEQSKANATAIGSEITGLLKGGGKWGKYSSSCLESCLEVYSEAVSDLKLGLVAVKMGDYETANTEVSAAMDAPLTCENGYNEKDGEVSPLTEKNEISAGMAPTSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKSTGSGAAQSQPQSGGCAC 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9016191 9022540 + CmaCh02G015850.1 Cma02g01585 289336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01585 376 ProSiteProfiles small GTPase Rho family profile. 171 344 - -
Cma02g01585 376 TIGRFAM small_GTP: small GTP-binding protein domain 177 334 IPR005225 GO:0005525
Cma02g01585 376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 349 IPR027417 -
Cma02g01585 376 Pfam Plant invertase/pectin methylesterase inhibitor 27 166 IPR006501 GO:0004857
Cma02g01585 376 PANTHER DRAB5-RELATED 169 376 - -
Cma02g01585 376 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 174 IPR035513 -
Cma02g01585 376 ProSiteProfiles small GTPase Rab1 family profile. 170 376 - -
Cma02g01585 376 SMART PMEI_2 23 169 IPR006501 GO:0004857
Cma02g01585 376 PRINTS Transforming protein P21 ras signature 281 294 - -
Cma02g01585 376 PRINTS Transforming protein P21 ras signature 201 217 - -
Cma02g01585 376 PRINTS Transforming protein P21 ras signature 178 199 - -
Cma02g01585 376 PRINTS Transforming protein P21 ras signature 316 338 - -
Cma02g01585 376 PRINTS Transforming protein P21 ras signature 219 241 - -
Cma02g01585 376 SMART rab_sub_5 178 341 - -
Cma02g01585 376 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 164 IPR006501 GO:0004857
Cma02g01585 376 CDD PMEI-Pla_a_1_like 32 164 IPR034088 -
Cma02g01585 376 Pfam Ras family 179 337 IPR001806 GO:0003924|GO:0005525
Cma02g01585 376 SMART rho_sub_3 180 340 IPR001806 GO:0003924|GO:0005525
Cma02g01585 376 ProSiteProfiles small GTPase Ras family profile. 173 376 IPR001806 GO:0003924|GO:0005525
Cma02g01585 376 SMART ras_sub_4 175 341 - -
Cma02g01585 376 Gene3D - 175 370 IPR027417 -
Cma02g01585 376 SMART ran_sub_2 183 376 - -
Cma02g01585 376 PANTHER GTP-BINDING PROTEIN RAB6 169 376 - -
Cma02g01585 376 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 167 IPR035513 -
Cma02g01585 376 CDD Rab6 178 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01585 K07893 RAB6A; Ras-related protein Rab-6A - csv:101204395 400.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01585 Cma-Chr2:9016191 Cma03g00806 Cma-Chr3:6175722 2.11E-126 dispersed
Cma19g00375 Cma-Chr19:4215798 Cma02g01585 Cma-Chr2:9016191 1.67E-68 transposed
Cma19g00371 Cma-Chr19:4204946 Cma02g01585 Cma-Chr2:9016191 1.82E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g618 . . . . . . . . . . Cma02g01585 . Car02g01349 . . . . . . . . . . . . . . . . . . Cone8ag0448 Cone12ag0437 . . . . Chy04g00049 . . . . . . . . . . Cmo02g01628 . . . . . . . . . . . . . . Cla09g01177 Cam09g1242 Cec09g1258 . . . Cre09g1206 . Csa03g04651 . Cme04g00063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013570 0 1 0 0 0 1 1 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 0 1 1 1 1 0 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01585 Cma_Chr02 FPKM 35.902145 35.088707 22.562771 21.092445 25.586012 27.73262 26.165533 25.633547 30.073166 27.100258