Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01606 ATGGCTGCTCACCTTGACCTTCTCTTTCAATACTCTTCTTCTTCATTTCTTCCTCTTTCTCAAATTACTCGACACGGGCTGACTCCGAACAGTTTAAGCCCTATGCAAACGCCGGACGTTGTCGACGACGATGACTCGTGGGAAGTCAGGGCTTTCGCTGAGGACACCGCTGATGTCATGGGAACTACTTGGCCTCCTAGGTCTTACACTTGCACTTTTTGTAGAAGAGAGTTCAGGTCTGCTCAAGCCCTAGGTGGTCATATGAATGTTCACCGTCGCGATCGTGCTCGGCTCCATCAAGCCCCGTCGAACGCAATCAAACCCTTTTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTTGACCTCAAATTCTTTCATCATCCCGGCTCATGATTTTAATGGTGGAGGGTTGTGTGTTCTCTACCCATTCCCAAACCCTTACAACATTCGCTCACCCTCTTCTCTTTTCTCTATGTCCCATCATTCCTTCAACAACTTCATGCCCTCTACCTCGGCCTTTCCGATTCGTAATCACCGTGCCGGAGCGAGTAGTTTCCCTCAATCCTTGAGTGATGAACAAGCCATGGAAAGTAGCAACCAAGAGGTTGATCTAGAGCTCAGGCTTGGACAAGCTCCTTCAACTCAAACTCTCATGGAAAAGGGACACAAAATCTCTAATTTTGAAGCTGCGTGTCTGAGGAAGAGATCATCAGATTGA 723 47.86 MAAHLDLLFQYSSSSFLPLSQITRHGLTPNSLSPMQTPDVVDDDDSWEVRAFAEDTADVMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPSNAIKPFSSSSSSSSSSSSLTSNSFIIPAHDFNGGGLCVLYPFPNPYNIRSPSSLFSMSHHSFNNFMPSTSAFPIRNHRAGASSFPQSLSDEQAMESSNQEVDLELRLGQAPSTQTLMEKGHKISNFEAACLRKRSSD 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9146091 9146813 - CmaCh02G016060.1 Cma02g01606 289357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01606 240 SMART c2h2final6 69 91 IPR013087 -
Cma02g01606 240 PANTHER OS07G0101800 PROTEIN 39 213 - -
Cma02g01606 240 SUPERFAMILY beta-beta-alpha zinc fingers 66 96 IPR036236 -
Cma02g01606 240 Pfam C2H2-type zinc finger 69 93 - -
Cma02g01606 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Cma02g01606 240 SUPERFAMILY Virus attachment protein globular domain 144 190 IPR008982 GO:0007155|GO:0019058|GO:0019062
Cma02g01606 240 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Cma02g01606 240 Gene3D Classic Zinc Finger 60 125 - -
Cma02g01606 240 PANTHER OS07G0101800 PROTEIN 39 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01606 - - - cmo:103503534 270.396
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01606 Cma06g00849 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01606 Cma-Chr2:9146091 Cma14g00121 Cma-Chr14:522392 9.83E-28 dispersed
Cma19g00243 Cma-Chr19:1729402 Cma02g01606 Cma-Chr2:9146091 6.60E-86 wgd
Cma02g01606 Cma-Chr2:9146091 Cma06g00849 Cma-Chr6:4722305 1.93E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g661 . . . Bda08g00626 Bpe05g00532 . Bma07g00945 . Cmo06g00876 . Cma02g01606 . Car02g01366 . . . Cpe05g00184 . . . . . . . Cla10g00172 Cam10g0171 Cec10g0180 Cco10g0180 Clacu10g0175 Cmu10g1023 Cre10g0429 . . . . . . . Cme06g02480 . . . Bda09g00708 Bpe08g00846 . Bma05g00715 . . Cmo02g01650 . Cma06g00849 . . . . . . . . . . . . . . . . . . . . Csa03g04620 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013309 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 0 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34548 PF13912 zf-C2H2_6 5.00E-06 CL0361 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01606 Cma_Chr02 FPKM 0.118949 0.0 0.0 0.0 7.517093 5.516431 7.09817 0.0 0.0 0.0