Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01607 ATGGCTGGTTTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGACCTGATTTCAACCTTCATCACCCGCACCACCACCCCGACACTCAATCTGATCATGAAGACGAATCAGATCAGCCGTTGGATTTCGTCTCCGCCGCCACTGACATGGCGGTCTCTCGCCGTCCCCGTGGCCGTCCAGCTGGCTCCAAAAACAAACCCAAGCCCCCGGTTATCATTACCCGGGAAAGCGCCAATACCCTAAGGGCTCATATTTTTGAAGTTGGAAGCGGCTGCGATGTCTTTGATAGCATCGCCATCTACGCCCGCCGCCGTCAACGGGGGATATGCATCTTGAATGCCAACGGAATGGTAACTAATCTCAACTTACGCCAACCGACGGGGACCGGTGCTGTCTTAAACCTACAAGGGAGGTTCGAGATATTATCGCTTACCGGATCTTTCCTACCGCCGCCTGCTCCTCCCGGCGCTACTAGTTTGACCATATATTTAGCGGGTGGTCAAGGGCAAGTCGTCGGTGGGAATGTTGTCGGAGAGTTGGTGGCAGCCGGGCCAGTAACTGTCATCGTCGCATCGTTTGCAAATGTAGCATACGAGAGACTCCCACTCGAAGAACAAGAACAAGAACAAGAACAAGATCAGATGCAGCCACCAACGTCGGAGGGCGGTGGAGGCAGGGGAGGCCCATTTCCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCCGAACCACATTCAGCTACCATTCTAA 768 52.47 MAGLDLGNRYIHQLQRPDFNLHHPHHHPDTQSDHEDESDQPLDFVSAATDMAVSRRPRGRPAGSKNKPKPPVIITRESANTLRAHIFEVGSGCDVFDSIAIYARRRQRGICILNANGMVTNLNLRQPTGTGAVLNLQGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTVIVASFANVAYERLPLEEQEQEQEQDQMQPPTSEGGGGRGGPFPDPSSGLPFFNLPLNMPNHIQLPF 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9151665 9152432 + CmaCh02G016070.1 Cma02g01607 289358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01607 255 ProSiteProfiles PPC domain profile profile. 79 216 IPR005175 -
Cma02g01607 255 MobiDBLite consensus disorder prediction 18 39 - -
Cma02g01607 255 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 195 IPR005175 -
Cma02g01607 255 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Cma02g01607 255 MobiDBLite consensus disorder prediction 53 72 - -
Cma02g01607 255 CDD DUF296 83 166 IPR005175 -
Cma02g01607 255 Gene3D - 82 215 - -
Cma02g01607 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 254 IPR014476 GO:0003680
Cma02g01607 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 254 - -
Cma02g01607 255 MobiDBLite consensus disorder prediction 206 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01607 Cma-Chr2:9151665 Cma14g01956 Cma-Chr14:13756219 5.00E-97 dispersed
Cma16g01151 Cma-Chr16:8853135 Cma02g01607 Cma-Chr2:9151665 2.27E-91 wgd
Cma19g00242 Cma-Chr19:1713777 Cma02g01607 Cma-Chr2:9151665 4.17E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01607 - - cmo:103503535 388.652