Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01609 ATGGATTCACTTGATACTCCTCCGTCACTCTCAGCACCGTCCAACATGACGGTCGGAGTACCGACGGCGTATTCGCCAGGCATGTCCAACGCCAACAACAATGCCTCTTCCACGCTTGGTCTAAATCCGGCTACGGCACAGATGATACCGCCTTCTGCGCGATTTCCGTTTAACTCTGTGATCGCCCCTGCGTCCGTGCCTTTGGATTCTATGAATGTTTCTCCGTACGACGGATCTCATTCTGGGAGTTTCAACGCTGATTCGGGGAAGAAGAAGAGAGGCCGGCCGAGGAAGTACACGCCTGATGGTAACATTGCCTTAGGCTTAGCACCTACCACTATGGCGTCTTCTGTCGGTCACGGGGATCTGAGCGGTACTCCTGATTTGGAGCAGCCGGCGAAGAAAGCGAGGGGAAGGCCACCAGGCTCGGGGAAGAAACAGATGAATGCTATTGGATCAAGCGGTGTTGGTTTTACTCCTCACGTAGTATGGGCGAAGCCTGGTGAGGACGTAGCAGCAAAAATTTTGGCCTTCTCACAGCAAGGACCACGAACTGTCTTCATTCTCTCTGCAAATGGTTCCATCAGTAATGCTACTCTTCGACACTCAATGACATCTGGTGGTTCTGTGACATATGAGGGGCAGTATGAGATAATCTCTCTGTCAGGCTCCTTTATGCTCTCGGAGAATAATGGAACTCGAAGTAGAACAGGCGGTTTGAGTGTGTTGCTGGCTGGGTCAGACGGACAGGTTCTTGGTGGTGGAGTTGCAGGAATGCTAATGGCAAGTTCCCAAGTACAGGTGGTTGTGGGAAGTTTTCTCGAGAATGATAAAAAGTCCAACAACACAGGTATGCTGAATTCTGGATCTTCTGCTTCACCATCTCAAATGATAAACTTTGGTGGTGCAGCAGCAGCAGCAGCGGCCAGCCCTCCATCGTTAGGGGCATCGAGTGGCGAGTCGTCTGCCGACAACGGAGGCAGCCCTCTTAACAACAGGCATCCCGGAATGTTCAGTAATAGCAGCCAGCCAATTCACAACATGCAGATGTACCACCAATTGTGGGCAGGCCAAACACAGCAGTGA 1086 51.57 MDSLDTPPSLSAPSNMTVGVPTAYSPGMSNANNNASSTLGLNPATAQMIPPSARFPFNSVIAPASVPLDSMNVSPYDGSHSGSFNADSGKKKRGRPRKYTPDGNIALGLAPTTMASSVGHGDLSGTPDLEQPAKKARGRPPGSGKKQMNAIGSSGVGFTPHVVWAKPGEDVAAKILAFSQQGPRTVFILSANGSISNATLRHSMTSGGSVTYEGQYEIISLSGSFMLSENNGTRSRTGGLSVLLAGSDGQVLGGGVAGMLMASSQVQVVVGSFLENDKKSNNTGMLNSGSSASPSQMINFGGAAAAAAASPPSLGASSGESSADNGGSPLNNRHPGMFSNSSQPIHNMQMYHQLWAGQTQQ 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9155140 9159407 - CmaCh02G016090.1 Cma02g01609 289360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01609 361 CDD DUF296 159 273 IPR005175 -
Cma02g01609 361 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Cma02g01609 361 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Cma02g01609 361 MobiDBLite consensus disorder prediction 1 41 - -
Cma02g01609 361 ProSiteProfiles PPC domain profile profile. 152 295 IPR005175 -
Cma02g01609 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 54 326 - -
Cma02g01609 361 MobiDBLite consensus disorder prediction 79 152 - -
Cma02g01609 361 MobiDBLite consensus disorder prediction 314 343 - -
Cma02g01609 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 54 326 IPR039605 GO:0003680
Cma02g01609 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 276 - -
Cma02g01609 361 MobiDBLite consensus disorder prediction 309 343 - -
Cma02g01609 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 273 IPR005175 -
Cma02g01609 361 Gene3D - 160 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01609 Cma-Chr2:9155140 Cma05g00961 Cma-Chr5:7769242 1.11E-60 dispersed
Cma03g01179 Cma-Chr3:7877999 Cma02g01609 Cma-Chr2:9155140 1.24E-16 dispersed
Cma16g01152 Cma-Chr16:8858536 Cma02g01609 Cma-Chr2:9155140 1.08E-121 wgd
Cma19g00241 Cma-Chr19:1705112 Cma02g01609 Cma-Chr2:9155140 0 wgd
Cma02g01609 Cma-Chr2:9155140 Cma06g00655 Cma-Chr6:3231771 6.90E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01609 - - csv:101205370 556.214