Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01614 ATGAATTTCTGGGCGGATGAGAACGCGTCGATGATGGACGCATTTATGAGCACCGATCTGAATTCCTTCTGGGTTACGCCGCCGCAGCCACAGCAACAGCAACTTCCTCAGCAGCCGTATGCATCTGTTTCTGCCGCGTCGGACCCGAGTAAAGCTGTCGGTCAATCGCTACCGCCGTCGTCTATGGCGGTTTTCAACCAGGAGACTCTCCAGCAGCGCCTCCAAGCCTTGATTGAAGGCGCTCAGGAGAGCTGGACTTACGCTATCTTCTGGCAGTCTTCGTATGACTGCTCCGGCGCCACCGTCTTGGGCTGGGGCGATGGGTACTACAAAGGCGAAGAAGATAAAGGCAAAGAAAAGGCCAAATCGAGTACCTCAAAATCAGAGCAGGAGTACCGTAAGAAAGTCCTTCGCGAGCTCAATTCTCTCATTTCTGGTTCACCTTCCTCTGAAGACGACGCCGTCGACGAGGTTGTCACCGATACCGAGTGGTTCTTCTTGGTGTCGATGACTCAGTCGTTCGTCTCCGGCGTCGGTTTACCGGGACAGGCGTTTTTCGACTCAAACCCTATTTGGGTTGCGGGTTCGGATCGGCTTGCGGGCTCGTTCTGTGAACGAGCCCGTCAAGGTCAGGTTTTCGGGTTGCAGACGGTGGTTTGTATTCCGTCGGCGAATGGAGTCGTGGAATTGGGGTCGAGTGAGTTGATATGCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTCAATTTCAATAATCTGGAGGTTGAAACCTGGCCAATTAGTGGTGTTGACCAAGGGGAGAATGACCCATCTTCGCTTTGGATCACTGAGCCATCAAACGCCATTGAAATTAAGGACCCTGCGACAGTGAGTACTAACAACAACAACAACAATCCTGTGCCTTCTGCTCCAACTCCGACCACCACAAACAGCCAGCCGATTTCCAAAATTACATCACAGATTGAAACCCCCAAATCAAGCGTTGTTACTGAAACTCCAACCTCTGTTCCTCCTCCTCAAAATAGCCACCGACAGTCGCAGCCGGTTCAGACACAGAGCTTCTTTACCAGGGAATTGAACTTCTCTGAATTTGGGTACGATAATAGCAGCTTGAAGGATGGGAACTCACATTCTCTCAAGCCGGAATCGGGCGAGATTCTGAACTTCGGTGAGAGCAAGAGGAGTTCCTTTCCCAAAACAGATACCTTGCCTTCGGGCAATTCCCAATTTGGAGCAGATGAGAATAAGAAGAGATCCCCTCCTTCACGTGGGAGTAACGAAGAGGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCATCCTCAGGCGCTTTGAAATCGGGTGGTGGCATTGGCGATTCCGATCACTCCGACCTTGAAGCTTCAGTGATCCGTGAGGTGGAGAGTAGTAGAGCGGTGGAGCCAGAGAAACGGCCTCGCAAACGGGGGCGAAAGCCTGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAGGCGGAGAGGCAGAGAAGAGAAAAGCTAAACCAAAGATTCTATGCTCTTCGAGCTGTGGTTCCAAATGTATCAAAAATGGACAAAGCTTCACTTCTTGGTGATGCTATCTCTTATATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGATTCAGATAAGGAGGATTTACAGAAGCAATTAGATTCAGTGAAGAAGTTGATGATGTCTAATAAAGATTCATGTATATCAACCTCAAATCAACCTCCGCCAGATGAAGACATTAAAGCATCAAACATCCATGGAAACCACAGTGGTATTGAAACCGATGTCGATGTGAAGATAATCAGTTGGGACGCAATGATCCGAATCCAATCGAGCAAGAAAAACCATCCAGCTGCACGGCTAATGGCAGCTTTAGAGGAACTGGACTTAGATATCAACCACGCAAGCATTTCAGTGGTTAATGATCTGATGATCCAACAAGCAACTGTCAAGATGAGTCGATTATACACTCAGGAGCAGCTAAGGTTAGCTCTTTCGTCGAAATTAGGCGCACCCCGGTAG 2043 48.85 MNFWADENASMMDAFMSTDLNSFWVTPPQPQQQQLPQQPYASVSAASDPSKAVGQSLPPSSMAVFNQETLQQRLQALIEGAQESWTYAIFWQSSYDCSGATVLGWGDGYYKGEEDKGKEKAKSSTSKSEQEYRKKVLRELNSLISGSPSSEDDAVDEVVTDTEWFFLVSMTQSFVSGVGLPGQAFFDSNPIWVAGSDRLAGSFCERARQGQVFGLQTVVCIPSANGVVELGSSELICQSSDLMNKVRVLFNFNNLEVETWPISGVDQGENDPSSLWITEPSNAIEIKDPATVSTNNNNNNPVPSAPTPTTTNSQPISKITSQIETPKSSVVTETPTSVPPPQNSHRQSQPVQTQSFFTRELNFSEFGYDNSSLKDGNSHSLKPESGEILNFGESKRSSFPKTDTLPSGNSQFGADENKKRSPPSRGSNEEGMLSFTSGVILPSSGALKSGGGIGDSDHSDLEASVIREVESSRAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTADSDKEDLQKQLDSVKKLMMSNKDSCISTSNQPPPDEDIKASNIHGNHSGIETDVDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMSRLYTQEQLRLALSSKLGAPR 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9172765 9174807 - CmaCh02G016140.1 Cma02g01614 289365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01614 680 Coils Coil 539 566 - -
Cma02g01614 680 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 493 542 IPR011598 GO:0046983
Cma02g01614 680 CDD bHLH_AtAIB_like 490 565 - -
Cma02g01614 680 MobiDBLite consensus disorder prediction 391 432 - -
Cma02g01614 680 Gene3D - 485 574 IPR036638 GO:0046983
Cma02g01614 680 MobiDBLite consensus disorder prediction 27 58 - -
Cma02g01614 680 MobiDBLite consensus disorder prediction 572 593 - -
Cma02g01614 680 MobiDBLite consensus disorder prediction 290 353 - -
Cma02g01614 680 MobiDBLite consensus disorder prediction 391 417 - -
Cma02g01614 680 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 70 250 IPR025610 -
Cma02g01614 680 SMART finulus 499 548 IPR011598 GO:0046983
Cma02g01614 680 PANTHER TRANSCRIPTION FACTOR MYC2 5 676 - -
Cma02g01614 680 MobiDBLite consensus disorder prediction 464 503 - -
Cma02g01614 680 Pfam Helix-loop-helix DNA-binding domain 497 542 IPR011598 GO:0046983
Cma02g01614 680 PANTHER MYC 5 676 IPR045084 GO:0003700|GO:0006355
Cma02g01614 680 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 496 564 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01614 Cma06g00648 CCT
Cma02g01614 Cma16g01157 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01614 Cma-Chr2:9172765 Cma16g01232 Cma-Chr16:9341338 1.10E-16 dispersed
Cma16g01157 Cma-Chr16:8881798 Cma02g01614 Cma-Chr2:9172765 0 wgd
Cma19g00236 Cma-Chr19:1667766 Cma02g01614 Cma-Chr2:9172765 0 wgd
Cma02g01614 Cma-Chr2:9172765 Cma06g00648 Cma-Chr6:3215044 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34549 PF14215 bHLH-MYC_N 3.80E-55 CL0161 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01614 K13422 - csv:101218165 1009.59