Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01617 ATGGGATCTTATGGCACCCCAAAAACTTGGATACCATATATGAGCAACAAAGATTGCTCTCAAGGGTTCTGTAGTGTATATTGTCCTCAGTGGTGTTACATCATGTTTTCACCTCCACCACCCTTAGAGTTTCCAGATGATGATTCAGGCCCAAATTTTTCACCTCTTGTGATTGCAATTATTGGAATTCTGGCTAGTGCTTTTCTTCTTATAACCTATTACACCATCATTTCAAAGTATTATGGCAACACGAGCCGCTTGTCTAGGACTCAAGATCATGACCCAAATCAGGAGTTTGAAGATACTCACAACCCAACACTCCACGAGCCGTGGCATGTCGCCACTACTGGCTTGGATGAAGCACTGATCAAGTGCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGTCTCAGTGAGTTTCAAGAAGATGAGAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTGTGTCGTGCAAACATCGTCTCTGTCACTGCTTCTTCTCCACTTCAACTGCCTGCAACCACTGGAAACCCCACAACTAATGAGGCCATTCCAGAGACTTCTCAGGCAAATGACCATGAGGGTATTTCACAGGAACCTGGAAGAAGTTTTGGCAATGACAATGCTAAGAACTCAGTTCGCGCTTTCAGTGATCTTGGAAATTTGGTGAAAAGAGATGCTGTCATTGAGCTTAGAGATGGAAGATTACAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAACCATATCATTATCGCAGATGAGTTTGGAGGCATTGATGAAGCAGGAAGCTCAGGTGATGTTGGATCATCCAAACATTCGATGGGAGAAGACAGCAAGTCAAATCATAGAAAAAGAATCTTACATTGTGTGATGAGTCCTGTCTCAATGAAGAGATCATTCTCAAGTGGAAGATTTTCTCTCACGAAACATGGAAGAGAACACAGAGGACTTGCCCCTGTCTGA 1059 43.15 MGSYGTPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDDSGPNFSPLVIAIIGILASAFLLITYYTIISKYYGNTSRLSRTQDHDPNQEFEDTHNPTLHEPWHVATTGLDEALIKCITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVTASSPLQLPATTGNPTTNEAIPETSQANDHEGISQEPGRSFGNDNAKNSVRAFSDLGNLVKRDAVIELRDGRLQQIRRSISMDHCSQNHIIIADEFGGIDEAGSSGDVGSSKHSMGEDSKSNHRKRILHCVMSPVSMKRSFSSGRFSLTKHGREHRGLAPV 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9189010 9190068 + CmaCh02G016170.1 Cma02g01617 289368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01617 352 Pfam Ring finger domain 142 185 IPR001841 -
Cma02g01617 352 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 265 344 IPR044675 -
Cma02g01617 352 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 225 IPR044675 -
Cma02g01617 352 MobiDBLite consensus disorder prediction 199 237 - -
Cma02g01617 352 SUPERFAMILY RING/U-box 137 192 - -
Cma02g01617 352 MobiDBLite consensus disorder prediction 293 314 - -
Cma02g01617 352 CDD RING-H2_EL5_like 142 185 - -
Cma02g01617 352 SMART ring_2 143 184 IPR001841 -
Cma02g01617 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 193 IPR013083 -
Cma02g01617 352 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Cma02g01617 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 6 225 - -
Cma02g01617 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 265 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01617 Cma-Chr2:9189010 Cma06g01187 Cma-Chr6:7977526 8.21E-68 dispersed
Cma04g00904 Cma-Chr4:4703906 Cma02g01617 Cma-Chr2:9189010 6.63E-14 dispersed
Cma17g00014 Cma-Chr17:61687 Cma02g01617 Cma-Chr2:9189010 5.66E-17 dispersed
Cma02g01617 Cma-Chr2:9189010 Cma02g01620 Cma-Chr2:9195361 3.42E-18 proximal
Cma20g00876 Cma-Chr20:4188349 Cma02g01617 Cma-Chr2:9189010 6.38E-26 transposed
Cma19g00468 Cma-Chr19:5612484 Cma02g01617 Cma-Chr2:9189010 1.54E-45 wgd
Cma19g00231 Cma-Chr19:1586009 Cma02g01617 Cma-Chr2:9189010 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01617 - - cmo:103503554 642.499