Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01618 ATGAGTATTGATGCTCTTTCCTCCAATGACTTGTTCAACTTAATCATCTACGACGCCATCTCTCCGACGCCGAACACTTCCCACGGAGTATGCGACTCGTCGGAGACTACTTTTTTCTCCAACCAAAAGGGTTTGAAGCATCAAGATCACCACCAACATGGCACGTTGGAACACCGGCCGAAACCCAATTTGGCGAGAAAACGCCACCCGAACGAGGCGGAAAGTAGCAACTGGGGGGCGGTCGGGTTGCAGCAAGGGAAGAGGAAAAGAAAGAGAAAACCAAAAGCTTGTAAGAACAAAGAAGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGACGTAAGCTGATGAGTGAGCATCTCTCAGTGTTACGTTCCCTCATGCCTGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGAGGAGCAGTGGAGTTTGTGAAGGAATTGGAGCATGTCCTATCAACACTTGAAGCCAAGAAGCTGCAAATTTTGCACCAAGAAATAGAAGAAAAACAAGAGAATTATAAGAATGAAGATTCAGTGAGAAGGAAGTTGTTTTCAGATAGTAACAGCTCTCAGTACTCAGCCAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCGAATCTCAGAATCCTTTCAATAAGAACACATAGACAGCTGTTGAAGCTCATTGCTGGCTTGCAGGCTCTTCGTCTCACTATTCTTCATCTCAATGTCACTGACTTTCATCCATTGGTTCTTTACTCTATTAGCCTTAAGGTGGAAGAAGGGTGTCAACTGAGATCAGTGGATGACATAGCAGCGGCAGCACATCAAATGGTTAGAATAATTGAGGAAGAAGGTGTTTTGTGTTAA 897 44.15 MSIDALSSNDLFNLIIYDAISPTPNTSHGVCDSSETTFFSNQKGLKHQDHHQHGTLEHRPKPNLARKRHPNEAESSNWGAVGLQQGKRKRKRKPKACKNKEEAETQRMTHIAVERNRRKLMSEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKKLQILHQEIEEKQENYKNEDSVRRKLFSDSNSSQYSAKSKASSADIEVTLIETHANLRILSIRTHRQLLKLIAGLQALRLTILHLNVTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHQMVRIIEEEGVLC 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9191464 9193286 - CmaCh02G016180.1 Cma02g01618 289369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01618 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 156 IPR011598 GO:0046983
Cma02g01618 298 MobiDBLite consensus disorder prediction 44 107 - -
Cma02g01618 298 Coils Coil 165 188 - -
Cma02g01618 298 PANTHER TRANSCRIPTION FACTOR BHLH71 1 296 - -
Cma02g01618 298 MobiDBLite consensus disorder prediction 44 73 - -
Cma02g01618 298 Pfam Helix-loop-helix DNA-binding domain 106 157 IPR011598 GO:0046983
Cma02g01618 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 174 IPR036638 GO:0046983
Cma02g01618 298 PANTHER MAX DIMERIZATION, MAD 1 296 - -
Cma02g01618 298 Gene3D - 96 188 IPR036638 GO:0046983
Cma02g01618 298 SMART finulus 111 162 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01618 Cma-Chr2:9191464 Cma05g00515 Cma-Chr5:2458214 1.69E-68 dispersed
Cma19g00230 Cma-Chr19:1582171 Cma02g01618 Cma-Chr2:9191464 6.56E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34551 PF00010 HLH 2.50E-08 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01618 - - cmax:111466851 375.555