Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01621 ATGGATTATAATGGGGGAAACGTAGTCCATGTGATTCCCGGGACGAGCAGCGAGAATTGGCCTGGCGAAGTTTGGGCCACCGAAGACGAATACAGAGCTTGGAACAATGGCGTTGATGGGTGTGTCGATACGCCCTCGAATTCGAGTTATGATCAAAGGCAATCCCAAAGCCGGTCCGGCAGCGAACCCCCAAATAAGAAATCAAGAAGCTCCCAGGATGTTACGTCCTCGAATCGATCAAAAGCGATAGGTAAAATGTTCTTCAAGACCAAACTCTGCTGCAAATTCCGCGCTGGAACCTGCCCTTACATCACCAATTGCAATTTTGCTCACAGCATTGAGGAGCTTAGGCGGCCACCACCGAATTGGCAGGAAATTGTGGCCGCCCATGAGGAAGAAAAGGCGGTATTTTTAGAGCCTAGGGAGGAATTTCAGATACCTTCACTTGGGACATCAAATTTTGGTTCCGAGTCGCAGAGGTCATATAAAGGACGACATTGCAAGAAGTTTTACACCGAGGAGGGGTGTCCATATGGGGATGGTTGTACATTTCTTCACGACGAGCAGTCGAAGAATCGAGAGAGTGTGGCAATAAGCCTGGGTCCTGGTGGCTACAGTGGTGGCGGATCAGGAAATGGATCAAACACTAAGCCTTCGAATTGGAAAACAAGGATATGTAACAAGTGGGAGTTGACGGGATATTGTCCATTCGGAAACAAATGTCATTTTGCTCATGGTGCTGCTGAATTGCACCGTTATGGTGGTGGGCTTATGGAGACAGAAACTAGAGACTCTTCATCTGCTCCTCCTGACCAGAAGCAGGGAGTATTACCGAAAGCTCCTGGCGATACAGTGGTTGCTTCTGTTCCTTCGGTTCCCCATTCAGACGTTTATCATGTCATGATTCCATCTCAGAGGTCAACCATTGTAATTCAAAGGTCAGGGCAGAGAACTCATCAGAAATGGAAGGGGCCCGATAAAATCAGTAGGATATATGGTGACTGGATCGACGACAACGAATAA 1023 47.9 MDYNGGNVVHVIPGTSSENWPGEVWATEDEYRAWNNGVDGCVDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVFLEPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDGCTFLHDEQSKNRESVAISLGPGGYSGGGSGNGSNTKPSNWKTRICNKWELTGYCPFGNKCHFAHGAAELHRYGGGLMETETRDSSSAPPDQKQGVLPKAPGDTVVASVPSVPHSDVYHVMIPSQRSTIVIQRSGQRTHQKWKGPDKISRIYGDWIDDNE 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9197161 9199765 - CmaCh02G016210.1 Cma02g01621 289372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01621 340 MobiDBLite consensus disorder prediction 40 78 - -
Cma02g01621 340 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 22 337 - -
Cma02g01621 340 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 337 IPR045877 GO:0003729
Cma02g01621 340 SUPERFAMILY CCCH zinc finger 217 251 IPR036855 GO:0046872
Cma02g01621 340 MobiDBLite consensus disorder prediction 36 78 - -
Cma02g01621 340 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Cma02g01621 340 Pfam CCCH-type zinc finger 165 187 IPR041367 -
Cma02g01621 340 SUPERFAMILY CCCH zinc finger 85 118 IPR036855 GO:0046872
Cma02g01621 340 MobiDBLite consensus disorder prediction 197 219 - -
Cma02g01621 340 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Cma02g01621 340 ProSiteProfiles Zinc finger C3H1-type profile. 220 248 IPR000571 GO:0046872
Cma02g01621 340 SUPERFAMILY CCCH zinc finger 160 189 IPR036855 GO:0046872
Cma02g01621 340 SMART c3hfinal6 220 247 IPR000571 GO:0046872
Cma02g01621 340 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Cma02g01621 340 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Cma02g01621 340 MobiDBLite consensus disorder prediction 259 282 - -
Cma02g01621 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 246 IPR000571 GO:0046872
Cma02g01621 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 112 IPR000571 GO:0046872
Cma02g01621 340 Gene3D - 151 203 - -
Cma02g01621 340 Gene3D - 82 118 - -
Cma02g01621 340 Gene3D - 213 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01621 - - - csv:101210161 652.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01621 Cma-Chr2:9197161 Cma05g01308 Cma-Chr5:9921476 1.34E-55 dispersed
Cma15g00931 Cma-Chr15:4918220 Cma02g01621 Cma-Chr2:9197161 6.88E-07 dispersed
Cma19g00229 Cma-Chr19:1573432 Cma02g01621 Cma-Chr2:9197161 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g684 . . . . . . Bma07g00926 Bma14g00159 . . Cma02g01621 . Car02g01380 . . . Cpe05g00170 . . . . . . . . . . . . . . . . . . . . Chy04g00106 . Blo03g00868 Blo19g00195 . Bda09g00731 Bpe08g00827 Bpe11g00328 . . . Cmo02g01666 Cmo19g00243 . . . . . Cpe15g00204 Bhi05g00481 . . . . . . . . . . . . . . Csa03g04597 . Cme04g00130
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004224 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 4 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34552 PF00642 zf-CCCH 1.10E-10 CL0537 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01621 Cma_Chr02 FPKM 5.612903 7.105291 8.114676 6.618782 15.688384 12.367972 13.910859 6.962091 6.104297 6.601145