Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01623 ATGAAATCGGCTCTCTTCAGAACCGTCTCCATTCCCGTTATCTCGCCGTCCGGCACCGCTTCGTCATCCTTCTCCAATTACAGACCGTTGCATGGAGTTTTCACCGGCCACAAGAGTTCCGTTTCGTCTCCAAAGATCTCTCTGCTTTTCGAGATGAATAATCCTAGAGGAAGGAATTCGAGTGGTATACGAAGGGTGTCATCGGAGAGCGACATCTCTCGATCGCTGCATGAGGTTTCGAATCCGTATGATCAATTTGGAGGAGTCGGATCTCGATCTCGGACTCGATCCTCTCATTCTGAAATACCAGAGGAGGAGTTTTTGAACCAGGATGAATTTGACAGTGATTCGATGGAGGAAGACTCTGGATGTTTGGATTCCGGAATCGGCTGCAGCGATGGCGCTGAATTTTTTACAGATACGTTTTATGACGGAAGTAATGACCGTAATAAGATCGGAGCGTACTACGAAGAGTTGCTGAAGTTGAACCCTAACGACGCTCTGTTACTGAGAAACTACGGAAAATTCTTACATGAGGTGGAGAAAGATCATGTGAGATCAGAGGAATGCTACAGCAGAGCAATATTGGCGAATCCAAGCGACGGAGAGTTGTTGGCTTTGTACGGAAAACTGGTGTGGGAGTCTCACAAAGACAAGCAAAGAGCTGAATATTACTTCGACCGCGCCGTGCGTGCCTCCCCTAACGACTGTTTGGTGATTGGTTGTTACGCCTATTTCTTGTGGCAAATTGAAGATGATGAAGAACAAGAGGCGGCGGAGGTATGGCCGGCGGCTATGGTAGCGGCGTTTTAA 813 47.85 MKSALFRTVSIPVISPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLLFEMNNPRGRNSSGIRRVSSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMEEDSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVIGCYAYFLWQIEDDEEQEAAEVWPAAMVAAF 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9202359 9203742 + CmaCh02G016230.1 Cma02g01623 289374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01623 270 MobiDBLite consensus disorder prediction 107 121 - -
Cma02g01623 270 MobiDBLite consensus disorder prediction 83 125 - -
Cma02g01623 270 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 258 - -
Cma02g01623 270 Gene3D Tetratricopeptide repeat domain 135 247 IPR011990 GO:0005515
Cma02g01623 270 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 258 - -
Cma02g01623 270 SUPERFAMILY TPR-like 149 255 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01623 - - - cmax:111466874 324.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01623 Cma-Chr2:9202359 Cma17g00860 Cma-Chr17:6634151 1.97E-35 dispersed
Cma14g01846 Cma-Chr14:13146436 Cma02g01623 Cma-Chr2:9202359 7.06E-11 dispersed
Cma19g00227 Cma-Chr19:1565496 Cma02g01623 Cma-Chr2:9202359 2.27E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g687 . . . . . . Bma07g00922 . . . Cma02g01623 . Car02g01382 . . . Cpe05g00169 . . . . . . . . . . . . . . Cone8ag0479 . . . . . Chy04g00108 . . Blo19g00198 . . Bpe08g00824 . . . Sed01g4122 Cmo02g01668 Cmo19g00241 . . . . . Cpe15g00202 Bhi05g00477 Tan07g1993 Cmetu04g2583 Lac11g2429 Hepe06g1786 . Lcy12g1959 . . . . . . . . Csa03g04595 . Cme04g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009490 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01623 Cma_Chr02 FPKM 0.0 0.0 0.181848 0.0 0.0 0.0 0.0 0.492137 0.397642 0.68216