Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01629 ATGTATGGGGATTGCCAAGTGATGTCAAGCAATATGGGAGCAAACATGGCTTCCTCTGAATCTCTCTTCTCTTCTCCCATTCAAAACCCTAATTTCAACTTCATTTCCAATTTCCACCACTTCCCTTCCGTCGTTCCTAAGGAAGAAAATGGGATGATTACGAGAGGAAAAGAAGATATAGAAAGTGGGTCTGGAAGTGAACAGCTCGTTGAAGAAAACCCAGGAATTGAAATGGAAAGTAATGATAATATTATTCTGCAAAATCAGAAGAAAAAACGCTATCATAGACATACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTTAAGGAATGTCCACACCCAGATGACAAGCAGCGGCTCAAACTCAGCCAAGAACTCGGCCTCAAACCTCGCCAAGTCAAGTTTTGGTTCCAAAATCGAAGAACCCAAATGAAGGCACAACAAGACAGATCGGATAATGTGATACTTAGGTCTGAAAATGATACCTTGAAGAATGAGAATTATAAACTGCAAACTGCCTTAAGAAACATTATATGCCCTAGCTGTGGAGGGCAAGGTATCCTTGGAGAGCCAAGCTTGGATGAACAGCAGCTTCGCCTTGAGAATGCTAGACTTAGAGAACAGTTGGAACAAGTTTGCTCCTTCACCTCAAGATACACTGGTCGTTCACTCCAAGTGATGTCCTCCACAGCTCCCCCTCTTATGCAACCATCTCTTGATTTGGACATGAACATATACTCAAGGCAATACACAGAGGCCATGGCTTCATCCTCCGAAATGATGCCACTGGGGTCGATGCTCCCGCCCAACGCCGCTCACTTCCCAGAAGGCGGTCTATTAATTGAGGAGGAAAAAACATTAGCTATGGATCTTGCTATATCGTCCATGGCTGAACTCGTGAAGATGTGCCGCTTAACCGAGCCGCTTTGGATTCGAAACAGCGAGAGCGGTAAGGAAGTTTTAAATGTAGAAGAACATGCCAGGATGTTTCCATGGCCATTGAACCTCAAACAACACTTGATGAATGAGTTTAGAACCGAAGCCACTCGTGATAGCGCCGTTGTTATAATGAACAGCATCACTCTTGTCGATGCCTTTCTCGACGCGAACAAATGGATGGAGTTATTCCCTTCACTCGTGGCCAAAGCAAAAACTGTGCAAATCATTTCATCAAGTGTTTCAGGCCATGCGAGCGGCTCCCTTCGATTGATGTATTCCGAACTTCAAGCTCTTTCTCCATTAATTCCGACGAGGGAAGCCCATTTCCTCCGGTGCTGCCAGCAGAACGCCGATGAAGGCAGCTGGGCAATTGTTGATTTTCCGATCGACAGCTTTCACGACAGCCTCCAACATTCATTTCCCAGATACAGGAGAAGGCCCTCCGGCTGCATTATCCAAGACATGCCCAACGGATATTCAAGGGTTACATGGGTGGAGCACGCAGAGATCGAAGAGAAGCCAATCCATCAAATATTCAATAATTTTGTTCATAGTGGAATGGCTTTTGGGGCGCATCGCTGGTTGGCTATTTTACAAAGACAATGCGAGAGAATTGCAAGCCTCATGGCTCGAAACATTTCTGATCTTGGAGTGATACCTTCACCAGAAGCAAGACAGAACTTAATGAAATTGGCCCAAAGAATGACCAGAACTTTCTCACTTAACATAAGCACCTCCGGTGGCCAGTCGTGGACGGCGTTGTCCGATTCTCCTGATGATACCGTCCGTATAACGACCCGAAAAATCGTCGAGCCTGGCCAACCTAATGGGGTTATTCTTAGTGCTGTCTCCACCACTTGGCTTCCCTATCCTCATTACCGTGTCTTCGATCTTCTTCGAGATGAACGACAGCGATCTCAGCTGGAGGTTCTTTCCAATGGGAATTCGTTGCACGAGGTTGCTCACATTGCTAATGGCTCCCACCCTGGAAACTGCATATCTCTGCTTCGTATCAATGTGGCCAGCAATTTCTCCCAGCATGTTGAGCTGATGCTGCAGGAGAGCTGCACGGACCAGTCTGGCAGCCTCGTCGTCTTCGCTATGATTGACGTCGATTCGATTCAGTTAGCCATGAGCGGAGAAGACTCCTCCAGCATTCCCCTCCTCCCCATAGGATTTTCCATCGTCCCCGTTGTCGGTTCGACTGCCGATGGACGCCTAGCATCATCGCCACCCAAGGACGGTGCTACTAATGCTGCAGTTGTCAACTCCGGCTGCTTACTTACTGTCGGCCTGCAAGTTCTAGCCAGCACCATTCCATCGGCGAAGCTCAACCTGTCTAGTGTAACCGCCATCAACAACCAGCTCTGTAACACGCTCCACCAAATTAACGCTGCTCTTGGCTGCAGCCCAACTCAGCTCGAGAATGCCAATACCGCTGTCGACCAGAATACTGCACTGCCGCTGCCGACACAACCGCCACCCAAGCAATAA 2436 47.78 MYGDCQVMSSNMGANMASSESLFSSPIQNPNFNFISNFHHFPSVVPKEENGMITRGKEDIESGSGSEQLVEENPGIEMESNDNIILQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRSENDTLKNENYKLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLREQLEQVCSFTSRYTGRSLQVMSSTAPPLMQPSLDLDMNIYSRQYTEAMASSSEMMPLGSMLPPNAAHFPEGGLLIEEEKTLAMDLAISSMAELVKMCRLTEPLWIRNSESGKEVLNVEEHARMFPWPLNLKQHLMNEFRTEATRDSAVVIMNSITLVDAFLDANKWMELFPSLVAKAKTVQIISSSVSGHASGSLRLMYSELQALSPLIPTREAHFLRCCQQNADEGSWAIVDFPIDSFHDSLQHSFPRYRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNNFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMTRTFSLNISTSGGQSWTALSDSPDDTVRITTRKIVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERQRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNFSQHVELMLQESCTDQSGSLVVFAMIDVDSIQLAMSGEDSSSIPLLPIGFSIVPVVGSTADGRLASSPPKDGATNAAVVNSGCLLTVGLQVLASTIPSAKLNLSSVTAINNQLCNTLHQINAALGCSPTQLENANTAVDQNTALPLPTQPPPKQ 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9223337 9228073 + CmaCh02G016290.1 Cma02g01629 289380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01629 811 PANTHER - 82 788 - -
Cma02g01629 811 CDD homeodomain 91 149 IPR001356 GO:0003677
Cma02g01629 811 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 82 788 IPR042160 -
Cma02g01629 811 Gene3D - 78 159 - -
Cma02g01629 811 SUPERFAMILY Homeodomain-like 80 149 IPR009057 -
Cma02g01629 811 CDD START_ArGLABRA2_like 286 517 - -
Cma02g01629 811 Pfam Homeodomain 91 146 IPR001356 GO:0003677
Cma02g01629 811 SMART HOX_1 89 152 IPR001356 GO:0003677
Cma02g01629 811 Pfam START domain 292 518 IPR002913 GO:0008289
Cma02g01629 811 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Cma02g01629 811 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Cma02g01629 811 SMART START_1 291 518 IPR002913 GO:0008289
Cma02g01629 811 SUPERFAMILY Bet v1-like 555 777 - -
Cma02g01629 811 Gene3D - 326 516 IPR023393 -
Cma02g01629 811 SUPERFAMILY Bet v1-like 284 520 - -
Cma02g01629 811 ProSiteProfiles START domain profile. 282 521 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01629 Cma-Chr2:9223337 Cma13g01095 Cma-Chr13:8246548 0 dispersed
Cma19g00218 Cma-Chr19:1489764 Cma02g01629 Cma-Chr2:9223337 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34554 PF01852 START 1.80E-41 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01629 - - csv:101212772 1419.06