Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01640 ATGGGTGGCAGTGAGATAAATAAATCAGCGAAGGAGGAATCCAAGTCTGCGCCTGCCACTACACAGGAAGAGTCTCCAAACACAAGCACTGGCATTGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATTTGCCAACAAGCCCCCAGGCACACCCATATATGTGGGGGGTACAGCCCATTATGCCCCCTTATGGTACCCCTCCACATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCACCTATTCCTCCGGGATCATATCCTTACAGTCCTTTTGCTATAGCTTCTCCAAATGGAATTGCTGAGGCTTCTGGGAATACACCAGGCAACATGGAAGGGGATGGTAAGCCCTCTGAGCTGAAAGAAAAGTTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAACATGATCACTGGGAAGAACAACGAGCTTGGTAAACCATCAGGAGCATCTGCTAATGGTGTTTATTCTAAAAGCACTGAAAGTGAAAGTGAAGGTTCAAGCGAAAGAAGTGATGCTGACTCTCAAAATGATTCACAACTAAAATCTGGATCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTAATGCACGGTTCTCAGAATGAAGGACATAGTCTCGCTCATCCATTGGTGAACCAAACAATGTCCATAATACCAATTCAAGCTTCTGGAGCTGTTTCAGGTCCTGCTACAAATTTGAATATAGGAATGGATTATTGGGGTACTCCTACAACTTCTGCCATCCCTTCATTGGGTGGGAAGGTCCCTTCCGCTCCGGTTGTGGGAGCTGCTGCTGCTGGGTCACGGGACAGCATTCAGTCACAGATTTGGTTACAGGATGAAAGAGAGCTAAAAAGGCAAAAAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGGTCTCGGTTGCGCAAACAGGCTGAATGTGACGAGCTTTCTCATCGTGCCGAAGCTTTGAATGAGGAAAATGCGAGTCTTAGGTCCGAAGTGGATAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAGAATGCTTCTCTCAAGAGGAGGCTTGGAGAAAGTGATGGAAAAGAAGATCCAAGAGCCACCAAAGATGGCCAAAATGTGAATAAAGAAGCTCAGCGTACATCCTGGACCGAGTTCACCAACGGGTAG 1206 46.1 MGGSEINKSAKEESKSAPATTQEESPNTSTGIVNPEWSGFQAYSPIPPPGYLPTSPQAHPYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPIPPGSYPYSPFAIASPNGIAEASGNTPGNMEGDGKPSELKEKLPIKRSKGSLGSLNMITGKNNELGKPSGASANGVYSKSTESESEGSSERSDADSQNDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSIIPIQASGAVSGPATNLNIGMDYWGTPTTSAIPSLGGKVPSAPVVGAAAAGSRDSIQSQIWLQDERELKRQKRKQSNRESARRSRLRKQAECDELSHRAEALNEENASLRSEVDRIRSEYEQLLSENASLKRRLGESDGKEDPRATKDGQNVNKEAQRTSWTEFTNG 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9295412 9303960 - CmaCh02G016400.1 Cma02g01640 289391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01640 401 MobiDBLite consensus disorder prediction 113 223 - -
Cma02g01640 401 MobiDBLite consensus disorder prediction 13 37 - -
Cma02g01640 401 MobiDBLite consensus disorder prediction 365 385 - -
Cma02g01640 401 MobiDBLite consensus disorder prediction 1 48 - -
Cma02g01640 401 CDD bZIP_plant_GBF1 304 354 IPR045314 GO:0003700|GO:0006355
Cma02g01640 401 Pfam G-box binding protein MFMR 1 95 IPR012900 -
Cma02g01640 401 Pfam bZIP transcription factor 299 361 IPR004827 GO:0003700|GO:0006355
Cma02g01640 401 Coils Coil 319 367 - -
Cma02g01640 401 MobiDBLite consensus disorder prediction 301 326 - -
Cma02g01640 401 MobiDBLite consensus disorder prediction 361 401 - -
Cma02g01640 401 Gene3D - 302 356 - -
Cma02g01640 401 PANTHER BZIP TRANSCRIPTION FACTOR 68 1 395 - -
Cma02g01640 401 SMART brlzneu 299 363 IPR004827 GO:0003700|GO:0006355
Cma02g01640 401 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 306 321 IPR004827 GO:0003700|GO:0006355
Cma02g01640 401 MobiDBLite consensus disorder prediction 386 401 - -
Cma02g01640 401 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 301 364 IPR004827 GO:0003700|GO:0006355
Cma02g01640 401 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 395 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cma02g01640 401 Pfam Disordered region downstream of MFMR 134 267 - -
Cma02g01640 401 MobiDBLite consensus disorder prediction 145 176 - -
Cma02g01640 401 SUPERFAMILY Leucine zipper domain 302 358 IPR046347 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01640 Cma16g01193 CCT
Cma02g01640 Cma06g00624 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01640 Cma-Chr2:9295412 Cma07g00503 Cma-Chr7:2163688 3.31E-56 dispersed
Cma16g01193 Cma-Chr16:9100070 Cma02g01640 Cma-Chr2:9295412 4.98E-171 wgd
Cma02g01640 Cma-Chr2:9295412 Cma06g00624 Cma-Chr6:3042042 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34556 PF16596 MFMR_assoc 2.10E-48 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01640 K09060 - csv:101214217 702.59