Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01653 ATGTCCCTCCTCAGTAGATTCTTTTACAGAAGACCCCCAGATGGGTTGCTCGAATTTGTTGAGCGAGTATACATTTTCGATTCGTGCTTTTCCACTGATGTATTGCCCGATGGTATGTACCAAATATATCTGCATGAAATCATAAACGAATTACATGAAGAATTCCCAGACTCCTCCTTCCTTGCATTTAATTTTCGTGAAGGAGAGAAAATGAGCCAATTTGCAGAAATGTTGTGCGAATATGATGTCTCTGTGATGGATTATCCTCGACAATATGAAGGGTGCCCTCTTCTTCCATTGTCTTTAATACAGCACTTCCTACGTGTTTGTGAAAGTTGGCTTCTGCTTGGTAATCAACAAAATATCATTCTTCTCCACTGTGAGAGGGGAGGTTGGCCACTCTTAGCATACCTTTTAGCTAGCTTTTTGATTTATAGAAAATTGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTACATCGAGAAGCTCCCAAGGGGTTTTTGCAGCTCTTGTCACCATTAAATCCATTTCCATCTCAGCTCCGCTACTTGCAATATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTCTCTTTAGATTGTGTAATTCTTCGTGGTGTTCCAGGTTTTGATTCTCAGAATGGCTGCAGACCAGTTATTCGTATCTTTGGGAGAAATCTTTTCAGTAAGGGTGGGCTTTCCACACAAATGATTTTTTCCATGCCCAAGAAAAATAGGGTCCTCCGTCATTACCGCCAGGTAGACTCTGATGTGATTAAAATAGATGTGCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAACCAGAACCAGAAAGGGAAGTTATGATGTTTCGTATAATGTTCAACACAGCATTTATTCGATCAAACATACTGATACTAACTTCTGAAAATTTGGACATTCTTTGGGATTCAAAGGAACGCTATCCAAAAGGCTTTCGAGCTGAGGTTTTGTTTGGGGAGGTAGAATGCATTTCCCCTCCAAGGGCTCCAACCACAATTTTGAATGGCGAAGAGAAAGGTGGATTACCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTGGATTGGATGGATACCAATGATGATGTTGCCTTGTGGCTACTGAAAAATCTTTCTGCCTTGAGTGACGTGAAAGAATTGTCAGGATGGCAAACTAAAGCAAGTTCATATTCCTCGCCCGTGGATTCTGAAGAGGAAAATAATACGTCTAGCACTGCTGACAGTTCAGATGAAGTATTCGATAGTATGACAAAGTCCTTCGTTGATTTAGCTTCTGCCAATTTTACAATTCCAGCTCTGGTACGTTCTTCTGAATTATTGTCTGGCAAGATCGGTGCTACTGAAGTGAATGTTTCATCAGAGTCTCCTCAAACTTTTGATGAATGTCAGGATGAGGTCTTTTTAAATAAAGAATCTCTACCGTCTTCATCACCTCCATTATCTTCTCATAGCTCCTCACCCCCTCCTATAAGTTCTTTAATGCCATCACAACTGTTGCCTCCTAATGTACCATCTACCGATGTTAGTGGGGAACTTGTCTCGAACAAGATGACACCCACTGTTAAAGTGATTCCTCCTCCGCCACCGCCACCCCCACCACAACCTTTTTCTTCATCTCATAATAAACCTCATGTAGAAACTTCCATGAGTTTTGACTCCACGTCCATAACAGTGCATGGGATACCCTCTCCTTCGCTTTCACTTGTTCATAAATCCTCTAGTGCTCCTCCACCCCCACCTCCACCTCCCCCTCCCCTCCCAAAAACAACTGGTGTTCCACTGCCACCTCCTGCTTTTGTTGAAAAATCTTCTAGTGCTCCTCCACCTCCCACTCCACCTCCAGTTCCGAATTCTTTTGGTGCTCCCCCGCCTCCACCTCCACCTCCACCTCTAATTCCAAAATGTTCTAGTGCTCCTCCACCTCCTCCTCCGCCTCCAATTTTGAAATGTTCTAGTGCTCCTCCACCTCCACCTCCACCACCTATTCCAAAGTCTTCTAGTGCTCCTCCAACCCCACCTCCTCTTCCAGAATCAAATCGTGGCATGACACCAGTTCCACCTCCTCCACCACCAAAACCTCCTGGTGTTGAGCCACCAAGTCAGGGTACTAAACCAACTAGGCCTCCTCCACCTCCTCCACCAACAAAGGTGTTTAGTTCTAATCCTCCGACAAGTCGTGGTGCTACACCAATGCCACCCCCTCTGCCCGGATCAACACGGTCAAATGTACCACCCCCTCCTGATGGAAGGGGGAAATCTTCTCCAGGATCAACAACTCAAGGAAGTGGTCGAGTTGCTACGGGAGCTGTAAATGCTCCAAAGAAAACCACTTTGAAACCATTGCACTGGGTAAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAGAATCAATCAAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCATCTGATGGAAGTGGCAGCAAAAGTGGAGGACGACGTGCTTCCAACATCAACAAACCTGAAAAAGTGCAACTGATTGACCTACGGAGAGCATATAACTGTGAAATCATGCTCTCAAAAGTAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATCAAGTTCTGTCCTACTAGGGAAGAAATGGAAACGTTGAAGAATTATACAGGTGACAAAGCAATGCTTGGAAAGTGTGAGCAGTTTTTTCTCGAGTTAATGAAGGTCCCACGAATAGAGCCCAAGTTACGAGTATTTGCTTTCAAAATTACCTTTTCAAGCCAGGTGAAGGATTTGAGATATAATTTGAATACAATAAATGATGCTACAAGAGAGGTCAAAGGATCTGAAAAATTGCGTCAAGTAATGCAAACAATTCTTACATTGGGGAATGCATTAAACCAGGGTACTGCTCGAGGCTCTGCTATAGGTTTTAAGTTGGACAGCCTTCTTAAATTGTCTGATACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTATGTAAGCTCCTTGCAGAGAAAATGCCAGAGTTACTTGATTTTGACAAGAACCTTGTTCATTTAGAAGCTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAAGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACTGCTTCTGAAAATGACGGTGCTATCTCTATTGGTTTCCAGAAGGTTCTGAAGAATTTTCTTGATACTGCTGAAGCTGAAGTAAGGACACTCATCTCCTTATATTCTGTAGTGGGGAGAAACGCTGATTCATTATCCCAGTACTTTGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTGACTCAAATATTGATAGTTTTTGTTAAGATGTTCAAGAAGTCACGCGAAGAAAATGTAAGGCAGGCTGATGCTGAAAAGAAAAAAATAGAGAAGGAAGCCATGAAAGAAAGAAGTTTTGTAAAAGCAAAGTGA 3588 43.09 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTDVLPDGMYQIYLHEIINELHEEFPDSSFLAFNFREGEKMSQFAEMLCEYDVSVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNIILLHCERGGWPLLAYLLASFLIYRKLHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGVPGFDSQNGCRPVIRIFGRNLFSKGGLSTQMIFSMPKKNRVLRHYRQVDSDVIKIDVQCLVQGDVVLECSHLEPEPEREVMMFRIMFNTAFIRSNILILTSENLDILWDSKERYPKGFRAEVLFGEVECISPPRAPTTILNGEEKGGLPIEAFSRVQELFSGVDWMDTNDDVALWLLKNLSALSDVKELSGWQTKASSYSSPVDSEEENNTSSTADSSDEVFDSMTKSFVDLASANFTIPALVRSSELLSGKIGATEVNVSSESPQTFDECQDEVFLNKESLPSSSPPLSSHSSSPPPISSLMPSQLLPPNVPSTDVSGELVSNKMTPTVKVIPPPPPPPPPQPFSSSHNKPHVETSMSFDSTSITVHGIPSPSLSLVHKSSSAPPPPPPPPPPLPKTTGVPLPPPAFVEKSSSAPPPPTPPPVPNSFGAPPPPPPPPPLIPKCSSAPPPPPPPPILKCSSAPPPPPPPPIPKSSSAPPTPPPLPESNRGMTPVPPPPPPKPPGVEPPSQGTKPTRPPPPPPPTKVFSSNPPTSRGATPMPPPLPGSTRSNVPPPPDGRGKSSPGSTTQGSGRVATGAVNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKSGGRRASNINKPEKVQLIDLRRAYNCEIMLSKVKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKNYTGDKAMLGKCEQFFLELMKVPRIEPKLRVFAFKITFSSQVKDLRYNLNTINDATREVKGSEKLRQVMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKNLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISIGFQKVLKNFLDTAEAEVRTLISLYSVVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENVRQADAEKKKIEKEAMKERSFVKAK 1195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9362611 9372556 + CmaCh02G016530.1 Cma02g01653 289404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01653 1195 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Cma02g01653 1195 Coils Coil 1070 1097 - -
Cma02g01653 1195 Gene3D Formin, FH2 domain 788 1175 IPR042201 -
Cma02g01653 1195 PANTHER FORMIN-J 1 1189 - -
Cma02g01653 1195 MobiDBLite consensus disorder prediction 492 797 - -
Cma02g01653 1195 MobiDBLite consensus disorder prediction 594 740 - -
Cma02g01653 1195 MobiDBLite consensus disorder prediction 773 787 - -
Cma02g01653 1195 SMART it6_source 788 1195 IPR015425 -
Cma02g01653 1195 MobiDBLite consensus disorder prediction 747 772 - -
Cma02g01653 1195 ProSiteProfiles Formin homology-2 (FH2) domain profile. 789 1189 IPR015425 -
Cma02g01653 1195 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 20 187 IPR029021 -
Cma02g01653 1195 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cma02g01653 1195 MobiDBLite consensus disorder prediction 560 593 - -
Cma02g01653 1195 Gene3D - 197 342 - -
Cma02g01653 1195 MobiDBLite consensus disorder prediction 492 537 - -
Cma02g01653 1195 MobiDBLite consensus disorder prediction 542 559 - -
Cma02g01653 1195 SMART PTEN_C2_2 198 338 IPR014020 -
Cma02g01653 1195 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Cma02g01653 1195 SUPERFAMILY Formin homology 2 domain (FH2 domain) 864 1190 - -
Cma02g01653 1195 Pfam Formin Homology 2 Domain 793 1164 IPR015425 -
Cma02g01653 1195 Coils Coil 1164 1184 - -
Cma02g01653 1195 MobiDBLite consensus disorder prediction 408 432 - -
Cma02g01653 1195 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01662 Cma-Chr1:11366769 Cma02g01653 Cma-Chr2:9362611 2.64E-152 dispersed
Cma02g01653 Cma-Chr2:9362611 Cma11g00467 Cma-Chr11:2260206 1.05E-175 dispersed
Cma19g00192 Cma-Chr19:1268107 Cma02g01653 Cma-Chr2:9362611 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01653 - - fve:101301690 1417.52