Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01665 ATGGTGGCCTTCTATAGTAAGTTTCCTCTTCGTCACTCTTCGTCTCCTGGCCAGCCACAGTGGATCCACGACAAGGTGGTGAAAGCGTCTCGTCTCGTCTGTTCTCTAACTGTTGAAGTGATCGAAACCTGCTTACCGATCTTGATGGCGAAAACCGGTGTGTTTGATTCTAATCCTACAGTCATGGGGAAGGCCATGGACTTGAAGAGGGAGTTACAGAAGCTCATCGTTGCTATAATTGATGATGATAATTACTCCACTGATGCTATTGATCAAGCTAAAGAGATTCTTTGTGCGCTCAAGGAGTTGAAACTTAGGAAGAGATCACGCTCTTCGAATCTCTACGAGAATCTCATTTGCCCTGATGAATTTCGTTGTCCGCTTTCTACCGAGCTCATGAGAGATCCTGTTGTTGTCTCTACTGGCGAGACATTCGACAGACCCTTCATTCAAAAATGGTTGAAATCAGGAAACCGAACGTGCCCAAGAACTCAGCAAGTTCTTTCACACACGAACCTTACTCCCAATCACTTGATTCGTGGAATGATATCTCGGTGGTGTAGTAGTCGGGGAATTGAGTTGCAAGATCGTGTCCATTATCTTGATGACGATATAATAACAGAGGCTGATCGGGGCCGTTTCCATAGGTTAATAGAGAAAATGTCTGCAACATTACCTGAACAAAAAGCTGCTGCTAAGGAACTTCGGATGTTGACAAAGCGGATGCCCTCATTTCGAGCACTTTTTGGTGAGTCCCATGATGCCATCTCTTTGTTGCTTAGTCCACTTTGTGGAGATAAATCCCAAAGTAGTGTTCATGCGGATCTGCAAGAAGATTTGATCACAACCCTCTTGAATCTGTCAATCCATGACAACAACAAGAAACTTGTTTCTGAAACTCCCAGGGTAGTACCTCTTCTAATGGAAGCATTGAGATCAGGAACCATGGAAACGAGGAGCAATGCAGCTGCCGCCCTTTTCACTCTGTCAGCTCTCGACTCAAACAAAGTACTCATCGGGAAAGCTGGTGCCTTGAAACCACTCATCGACCTTTTAGATGAGGGGCATCCATTATCTATCAAAGATGCTGCTTCAGCAATATTTAATCTTTGTATAATTCATGAAAATAAAGCAAGAGCTGTGAGAGATGGTGCAGTTCGAGTGCTTCTGAAAAAGATCATGAACCAAATGCACGTTGATGAGTTGTTGGCTATTCTAGCAATGCTTTCGAACCATCCAAAATCTATTGAGGAAATGGGAGAACTTAGAGCTGTTCATTCCCTGCTCAGAATTATCAGGGAAAGTACTTGTTCACGTAACAAGGAAAATTGCATTGTGATCATCCACGCTATTTGCTTATACGATCGAACCCAGTGGAAGGACATGAGGGAGGAGGAGAAATGCTATCGAACCATTTCTGAACTTGCTCAGAATGGGACTTCAAGGGCCAAGAGAAAGGCAAGTGGCATACTCGATAGACTGAACAGGGTAGTTAATACGACCCATACTACATAA 1515 43.83 MVAFYSKFPLRHSSSPGQPQWIHDKVVKASRLVCSLTVEVIETCLPILMAKTGVFDSNPTVMGKAMDLKRELQKLIVAIIDDDNYSTDAIDQAKEILCALKELKLRKRSRSSNLYENLICPDEFRCPLSTELMRDPVVVSTGETFDRPFIQKWLKSGNRTCPRTQQVLSHTNLTPNHLIRGMISRWCSSRGIELQDRVHYLDDDIITEADRGRFHRLIEKMSATLPEQKAAAKELRMLTKRMPSFRALFGESHDAISLLLSPLCGDKSQSSVHADLQEDLITTLLNLSIHDNNKKLVSETPRVVPLLMEALRSGTMETRSNAAAALFTLSALDSNKVLIGKAGALKPLIDLLDEGHPLSIKDAASAIFNLCIIHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSNHPKSIEEMGELRAVHSLLRIIRESTCSRNKENCIVIIHAICLYDRTQWKDMREEEKCYRTISELAQNGTSRAKRKASGILDRLNRVVNTTHTT 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9410473 9419835 + CmaCh02G016650.1 Cma02g01665 289416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01665 504 SUPERFAMILY ARM repeat 227 494 IPR016024 -
Cma02g01665 504 SMART Ubox_2 123 186 IPR003613 GO:0004842|GO:0016567
Cma02g01665 504 CDD RING-Ubox_PUB 124 166 IPR045210 -
Cma02g01665 504 SUPERFAMILY RING/U-box 120 196 - -
Cma02g01665 504 PANTHER U BOX DOMAIN-CONTAINING 54 501 - -
Cma02g01665 504 ProSiteProfiles U-box domain profile. 119 193 IPR003613 GO:0004842|GO:0016567
Cma02g01665 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 193 IPR013083 -
Cma02g01665 504 Pfam Armadillo/beta-catenin-like repeat 335 371 IPR000225 GO:0005515
Cma02g01665 504 Pfam U-box domain 121 190 IPR003613 GO:0004842|GO:0016567
Cma02g01665 504 Gene3D - 222 500 IPR011989 -
Cma02g01665 504 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 54 501 - -
Cma02g01665 504 SMART arm_5 332 372 IPR000225 GO:0005515
Cma02g01665 504 SMART arm_5 290 331 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01665 Cma-Chr2:9410473 Cma18g00906 Cma-Chr18:7786736 5.00E-94 dispersed
Cma12g00984 Cma-Chr12:7831286 Cma02g01665 Cma-Chr2:9410473 1.62E-120 transposed
Cma19g00177 Cma-Chr19:1168183 Cma02g01665 Cma-Chr2:9410473 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01665 - - csv:101215688 758.444