Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01666 ATGGGGCCGGGCTTCGTGGCCTTGTCTGGCGCTGCAAAACAGGCCGAGCTTCTCCGAAAAGATGGAAACCACTATTTTCAAAAAGGTAGAATCGGAGCCGCCATTGAAGCCTACACCGAGGCGATTACGCTATGCCCGAATGTTGCTGTGTATTTGACGAACCGCGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGATTGCCGTAGAGCTATTCAGATTGATAGCAATTCTGTGAAGGGACATTATATGTTAGGCCTAGCATTAATACAAAATAATGTATATCCAGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCAAAGAGTTATATGGTTGAGGAAATATGGCAGGAGCTTGCAAAAGCAAAATACAGGGAGTGGGAAAAAGCTTCTACCAAACGTTCATGGGAATTACAGACCTTGAAAGAAGCTTGTGAGGCAGCCCTTGAACAAAAGTATTTTCTTGACCATTCTGAACTAGAAGGGTTTGTAGATGAAGCTGAAATTGCTCATAGGAAACAATTAAAGTCTCTAAGAAGTGTGTTTGAAAAAGTTGGGGAGGCGGATGCGCCATCTGAGGTGCCTGATTATCTTTGTTGTAAAATTACACTTGATATTCTTCGTGATCCCGTTATCACTCCGAGTGGGGTTACGTATGAGAGAGCAGTGATACTCGACCATTTTCGAAAGGTGGGTAACTTTGATCCCTTAACGCGGGAACTGCTCGATGAGTCGCAACTTGTACCGAATTTAGCCATAAAGGAAGCAGTAGAAGCCTTTCTAGATAAGCATGGATGGGCTTATAATACAGATTAA 849 43.93 MGPGFVALSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVAVYLTNRALCHRKRNDWKKVEEDCRRAIQIDSNSVKGHYMLGLALIQNNVYPEGIKHLEKALDLGRGANPKSYMVEEIWQELAKAKYREWEKASTKRSWELQTLKEACEAALEQKYFLDHSELEGFVDEAEIAHRKQLKSLRSVFEKVGEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPLTRELLDESQLVPNLAIKEAVEAFLDKHGWAYNTD 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9420767 9424307 - CmaCh02G016660.1 Cma02g01666 289417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01666 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 280 IPR045200 GO:0000209|GO:0061630
Cma02g01666 282 SUPERFAMILY TPR-like 13 135 IPR011990 GO:0005515
Cma02g01666 282 SMART tpr_5 15 48 IPR019734 GO:0005515
Cma02g01666 282 SMART tpr_5 83 116 IPR019734 GO:0005515
Cma02g01666 282 SMART tpr_5 49 82 IPR019734 GO:0005515
Cma02g01666 282 PANTHER OS08G0113300 PROTEIN 9 280 - -
Cma02g01666 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Cma02g01666 282 Pfam TPR repeat 22 56 - -
Cma02g01666 282 SMART Ubox_2 208 271 IPR003613 GO:0004842|GO:0016567
Cma02g01666 282 SUPERFAMILY RING/U-box 199 279 - -
Cma02g01666 282 ProSiteProfiles U-box domain profile. 204 278 IPR003613 GO:0004842|GO:0016567
Cma02g01666 282 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
Cma02g01666 282 Pfam U-box domain 205 277 IPR003613 GO:0004842|GO:0016567
Cma02g01666 282 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Cma02g01666 282 CDD RING-Ubox_CHIP 205 271 IPR045202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01666 Cma-Chr2:9420767 Cma09g00793 Cma-Chr9:3855392 1.25E-12 dispersed
Cma19g00176 Cma-Chr19:1161960 Cma02g01666 Cma-Chr2:9420767 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01666 K09561 - csv:101215457 523.857