Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01681 ATGTTAAGATTCATGATCACAACAACCCCACTTTCCACTTCCCTTCAAAACCTCAAGAAACAGAGCCCTTTTGGTGCAAGAGGAAAACAGGAAAGAATTGTCTGCCACTGCCAGATTACACAAACTTCTCTATCTCTATCTCTATCTCTCTCCCTCTTCCAAGCTGCGACGATGGTTGGTAGCACCTTGTTCACTTTGGCTGAGGTTGCCTCCCACGACAACCGCAACGACTGCTGGTTGATCATTGAGGACAAGGTGTACGATGTAACAAAGTTCCTTGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAGCCATTGGTAAGGATGCAACCAATGATTTTTTCGATGTCGGGCACAGTAGCACTGCTCGAGCGATGATGGAAGAATTTTACGTAGGCGACATCGATAGCTCAACTATCCCTACAAAAAGGAAGTACACTCCTCCAAAGCAGCCCCTATACAACCAAGACAAGACACCAGAGTTCATTATCAAGGTCCTCCAGTTTCTAGCTCCCCTGGTAATTTTGGCATTGGCTTTTGGCATCCATCTCTATACCAAAACAACATGA 573 45.55 MLRFMITTTPLSTSLQNLKKQSPFGARGKQERIVCHCQITQTSLSLSLSLSLFQAATMVGSTLFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSAIGKDATNDFFDVGHSSTARAMMEEFYVGDIDSSTIPTKRKYTPPKQPLYNQDKTPEFIIKVLQFLAPLVILALAFGIHLYTKTT 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9474696 9477412 + CmaCh02G016810.1 Cma02g01681 289432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01681 190 PANTHER CYTOCHROME B5 61 188 - -
Cma02g01681 190 Gene3D - 58 142 IPR036400 -
Cma02g01681 190 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 61 137 IPR001199 -
Cma02g01681 190 SMART Cyt_b5_2 64 137 IPR001199 -
Cma02g01681 190 PRINTS Cytochrome B5 signature 96 110 IPR001199 -
Cma02g01681 190 PRINTS Cytochrome B5 signature 86 96 IPR001199 -
Cma02g01681 190 PRINTS Cytochrome B5 signature 124 136 IPR001199 -
Cma02g01681 190 PRINTS Cytochrome B5 signature 111 118 IPR001199 -
Cma02g01681 190 PANTHER - 61 188 - -
Cma02g01681 190 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 92 99 IPR018506 GO:0020037
Cma02g01681 190 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 62 147 IPR036400 -
Cma02g01681 190 Pfam Cytochrome b5-like Heme/Steroid binding domain 65 136 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01681 Cma-Chr2:9474696 Cma06g01244 Cma-Chr6:8291203 1.66E-66 dispersed
Cma12g01271 Cma-Chr12:9906853 Cma02g01681 Cma-Chr2:9474696 5.27E-20 transposed
Cma14g01890 Cma-Chr14:13376466 Cma02g01681 Cma-Chr2:9474696 4.06E-67 wgd
Cma17g00107 Cma-Chr17:521732 Cma02g01681 Cma-Chr2:9474696 1.30E-62 wgd
Cma19g00162 Cma-Chr19:1082126 Cma02g01681 Cma-Chr2:9474696 5.57E-88 wgd
Cma02g01681 Cma-Chr2:9474696 Cma06g01226 Cma-Chr6:8175526 8.97E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01681 K23490 - csv:101212882 254.988