Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01681 ATGTTAAGATTCATGATCACAACAACCCCACTTTCCACTTCCCTTCAAAACCTCAAGAAACAGAGCCCTTTTGGTGCAAGAGGAAAACAGGAAAGAATTGTCTGCCACTGCCAGATTACACAAACTTCTCTATCTCTATCTCTATCTCTCTCCCTCTTCCAAGCTGCGACGATGGTTGGTAGCACCTTGTTCACTTTGGCTGAGGTTGCCTCCCACGACAACCGCAACGACTGCTGGTTGATCATTGAGGACAAGGTGTACGATGTAACAAAGTTCCTTGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAGCCATTGGTAAGGATGCAACCAATGATTTTTTCGATGTCGGGCACAGTAGCACTGCTCGAGCGATGATGGAAGAATTTTACGTAGGCGACATCGATAGCTCAACTATCCCTACAAAAAGGAAGTACACTCCTCCAAAGCAGCCCCTATACAACCAAGACAAGACACCAGAGTTCATTATCAAGGTCCTCCAGTTTCTAGCTCCCCTGGTAATTTTGGCATTGGCTTTTGGCATCCATCTCTATACCAAAACAACATGA 573 45.55 MLRFMITTTPLSTSLQNLKKQSPFGARGKQERIVCHCQITQTSLSLSLSLSLFQAATMVGSTLFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSAIGKDATNDFFDVGHSSTARAMMEEFYVGDIDSSTIPTKRKYTPPKQPLYNQDKTPEFIIKVLQFLAPLVILALAFGIHLYTKTT 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9474696 9477412 + CmaCh02G016810.1 Cma02g01681 289432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01681 190 PANTHER CYTOCHROME B5 61 188 - -
Cma02g01681 190 Gene3D - 58 142 IPR036400 -
Cma02g01681 190 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 61 137 IPR001199 -
Cma02g01681 190 SMART Cyt_b5_2 64 137 IPR001199 -
Cma02g01681 190 PRINTS Cytochrome B5 signature 96 110 IPR001199 -
Cma02g01681 190 PRINTS Cytochrome B5 signature 86 96 IPR001199 -
Cma02g01681 190 PRINTS Cytochrome B5 signature 124 136 IPR001199 -
Cma02g01681 190 PRINTS Cytochrome B5 signature 111 118 IPR001199 -
Cma02g01681 190 PANTHER - 61 188 - -
Cma02g01681 190 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 92 99 IPR018506 GO:0020037
Cma02g01681 190 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 62 147 IPR036400 -
Cma02g01681 190 Pfam Cytochrome b5-like Heme/Steroid binding domain 65 136 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01681 K23490 CYB5; cytochrome b5 - csv:101212882 254.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01681 Cma-Chr2:9474696 Cma06g01244 Cma-Chr6:8291203 1.66E-66 dispersed
Cma12g01271 Cma-Chr12:9906853 Cma02g01681 Cma-Chr2:9474696 5.27E-20 transposed
Cma14g01890 Cma-Chr14:13376466 Cma02g01681 Cma-Chr2:9474696 4.06E-67 wgd
Cma17g00107 Cma-Chr17:521732 Cma02g01681 Cma-Chr2:9474696 1.30E-62 wgd
Cma19g00162 Cma-Chr19:1082126 Cma02g01681 Cma-Chr2:9474696 5.57E-88 wgd
Cma02g01681 Cma-Chr2:9474696 Cma06g01226 Cma-Chr6:8175526 8.97E-06 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-58 222.2
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G53560 76.1 2.4e-57 218.8
Cma14g01890 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.8e-52 202.6
Cma06g01244 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cma17g00107 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-47 186.0
Cma02g01681 . 63 188 NADPH P450 reductases AT5G53560 63.5 2.3e-44 175.6
Cma19g00162 . 80 207 NADPH P450 reductases AT5G53560 64.1 3.1e-44 175.3
Cma06g01244 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma14g01890 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma17g00107 . 1 133 NADPH P450 reductases AT5G48810 61.5 1.0e-45 180.3
Cma19g00162 . 78 208 NADPH P450 reductases AT5G48810 63.2 2.9e-45 178.7
Cma02g01681 . 63 189 NADPH P450 reductases AT5G48810 62.8 1.4e-44 176.4
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G48810 57.4 5.5e-44 174.5
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.6e-43 172.9
Cma14g01890 . 22 133 NADPH P450 reductases AT2G32720 84.8 9.8e-51 196.8
Cma06g01244 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.9e-50 194.5
Cma17g00107 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.9e-46 182.6
Cma02g01681 . 78 189 NADPH P450 reductases AT2G32720 71.4 1.9e-41 166.0
Cma19g00162 . 97 208 NADPH P450 reductases AT2G32720 71.4 9.2e-41 163.7
Cma02g01139 CST 22 133 NADPH P450 reductases AT2G32720 66.1 6.0e-40 161.0
Cma15g01010 CST 22 133 NADPH P450 reductases AT2G32720 64.3 1.3e-39 159.8
Cma05g00451 . 1 130 NADPH P450 reductases AT1G26340 56.7 1.9e-38 156.0
Cma07g01119 CST 2 281 NADPH P450 reductases AT5G17770 80.7 3.7e-132 468.4
Cma03g00173 CST 2 281 NADPH P450 reductases AT5G17770 81.1 5.8e-130 461.1
Cma06g00055 . 2 280 NADPH P450 reductases AT5G17770 78.2 3.9e-126 448.4
Cma20g00014 . 1 282 NADPH P450 reductases AT5G17770 68.2 6.5e-113 404.4
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-58 222.2
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G53560 76.1 2.4e-57 218.8
Cma14g01890 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.8e-52 202.6
Cma06g01244 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cma17g00107 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-47 186.0
Cma02g01681 . 63 188 NADPH P450 reductases AT5G53560 63.5 2.3e-44 175.6
Cma19g00162 . 80 207 NADPH P450 reductases AT5G53560 64.1 3.1e-44 175.3
Cma06g01244 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma14g01890 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma17g00107 . 1 133 NADPH P450 reductases AT5G48810 61.5 1.0e-45 180.3
Cma19g00162 . 78 208 NADPH P450 reductases AT5G48810 63.2 2.9e-45 178.7
Cma02g01681 . 63 189 NADPH P450 reductases AT5G48810 62.8 1.4e-44 176.4
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G48810 57.4 5.5e-44 174.5
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.6e-43 172.9
Cma14g01890 . 22 133 NADPH P450 reductases AT2G32720 84.8 9.8e-51 196.8
Cma06g01244 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.9e-50 194.5
Cma17g00107 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.9e-46 182.6
Cma02g01681 . 78 189 NADPH P450 reductases AT2G32720 71.4 1.9e-41 166.0
Cma19g00162 . 97 208 NADPH P450 reductases AT2G32720 71.4 9.2e-41 163.7
Cma02g01139 CST 22 133 NADPH P450 reductases AT2G32720 66.1 6.0e-40 161.0
Cma15g01010 CST 22 133 NADPH P450 reductases AT2G32720 64.3 1.3e-39 159.8
Cma05g00451 . 1 130 NADPH P450 reductases AT1G26340 56.7 1.9e-38 156.0
Cma07g01119 CST 2 281 NADPH P450 reductases AT5G17770 80.7 3.7e-132 468.4
Cma03g00173 CST 2 281 NADPH P450 reductases AT5G17770 81.1 5.8e-130 461.1
Cma06g00055 . 2 280 NADPH P450 reductases AT5G17770 78.2 3.9e-126 448.4
Cma20g00014 . 1 282 NADPH P450 reductases AT5G17770 68.2 6.5e-113 404.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01681 Cma_Chr02 FPKM 5.891442 5.969061 2.494413 3.533546 9.104361 9.252912 8.964926 1.666298 1.616208 1.268914