Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g01698 | ATGGCGGTTTCTCTCAGACTACACTTTTCGATGGCTTCTTCATTGCTCTTTCTTCTTCTCCACATCCTCTTCGTTCATTCAAGTTTTGCTGGAGATGAGAGATTGCAGAGCTTCAATTCTTCATCAATGGCGGACTGGAATGTTAAGAACGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTCGATTCGAGCATTCGCAACAGCACAGAGAGAAGGAATTTAGGGTTCTTCTCTTGCGGAACAGGAAACCCAATTGATGATTGTTGGCGATGCGACCCACGTTGGCAACTTCGCCGCAAGCACCTAGCAAATTGCGGCATTGGGTTCGGTCGCAACGCTGTCGGTGGCCGCGATGGGAGATACTATGTCGTTTCAGATCCTGGCGATGACGATCCTGTCAATCCCAGACCAGGAACCCTTCGCCATGCCGTGATTCAAGACAGGCCATTGTGGATTGTGTTCAAAAGAGATATGGTCATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAAACAATCGATGGCCGTGGTGCTAATGTCCACATTGCTTATGGCGCTTGCATTACAATCCAATTCGTAACCAATGTCATTATTCATGGTCTGCATATTCATGACTGTAAGCCAACGGGTAACGCCATGGTTCGAAGCTCCCCTAGTCATTATGGATGGAGGACAATGGCGGATGGGGATGGGGTTTCTATTTTTGGGTCGAGTCATATTTGGATTGACCATAACTCTCTTTCTAGCTGTGCTGATGGGCTCATCGACGCTGTGATGGGATCAACTGCCATTACCATTTCTAACAATTACTTCACCCACCACAATGAGGTGATACTTTTGGGACACAGTGACTCATATGTAAGAGACAAGCAAATGCAAGTGACCATTGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAAGGCAACAGATATCTTGCCCCTGCCAACCCTTTTGCCAAAGAGGTCACTAAGAGAGTTGATACGTGGAATGGTGAATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTTTGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGGGCAGCAGCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCCAAATCCTCTTCCTTGGTGGGCACCATTACTTCATCTGCAGGTGCCCTTTCTTGTCGCAGGGGATACCGTTGTTAA | 1305 | 46.51 | MAVSLRLHFSMASSLLFLLLHILFVHSSFAGDERLQSFNSSSMADWNVKNEHAVDNPEEIASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGVSIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVILLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVDTWNGEWKHWNWRSEGDLLLNGAYFTPSGAGAAASYARASSLGAKSSSLVGTITSSAGALSCRRGYRC | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 9553186 | 9556617 | + | CmaCh02G016980.1 | Cma02g01698 | 289449 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g01698 | 434 | SMART | amb_all | 160 | 357 | IPR002022 | - | |
Cma02g01698 | 434 | Gene3D | - | 85 | 427 | IPR012334 | - | |
Cma02g01698 | 434 | Pfam | Pectate lyase | 168 | 349 | IPR002022 | - | |
Cma02g01698 | 434 | SUPERFAMILY | Pectin lyase-like | 63 | 429 | IPR011050 | - | |
Cma02g01698 | 434 | PRINTS | Pollen allergen Amb family signature | 108 | 125 | IPR018082 | - | |
Cma02g01698 | 434 | PRINTS | Pollen allergen Amb family signature | 132 | 157 | IPR018082 | - | |
Cma02g01698 | 434 | PRINTS | Pollen allergen Amb family signature | 168 | 184 | IPR018082 | - | |
Cma02g01698 | 434 | PRINTS | Pollen allergen Amb family signature | 232 | 253 | IPR018082 | - | |
Cma02g01698 | 434 | PRINTS | Pollen allergen Amb family signature | 312 | 331 | IPR018082 | - | |
Cma02g01698 | 434 | PRINTS | Pollen allergen Amb family signature | 334 | 353 | IPR018082 | - | |
Cma02g01698 | 434 | PRINTS | Pollen allergen Amb family signature | 376 | 400 | IPR018082 | - | |
Cma02g01698 | 434 | PRINTS | Pollen allergen Amb family signature | 405 | 428 | IPR018082 | - | |
Cma02g01698 | 434 | PANTHER | PECTATE LYASE | 38 | 431 | - | - | |
Cma02g01698 | 434 | PANTHER | PECTATE LYASE 18-RELATED | 38 | 431 | IPR045032 | GO:0030570 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g01698 | Cma19g00136 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01698 | Cma-Chr2:9553186 | Cma13g00770 | Cma-Chr13:6648875 | 0 | dispersed | |
Cma14g01872 | Cma-Chr14:13264747 | Cma02g01698 | Cma-Chr2:9553186 | 0 | wgd | |
Cma17g00116 | Cma-Chr17:574066 | Cma02g01698 | Cma-Chr2:9553186 | 0 | wgd | |
Cma19g00136 | Cma-Chr19:853549 | Cma02g01698 | Cma-Chr2:9553186 | 0 | wgd | |
Cma02g01698 | Cma-Chr2:9553186 | Cma06g01265 | Cma-Chr6:8417871 | 0 | wgd | |
Cma02g01698 | Cma-Chr2:9553186 | Cma08g01035 | Cma-Chr8:6481057 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g01698 | K01728 | - | csv:101207204 | 816.994 |