Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01698 ATGGCGGTTTCTCTCAGACTACACTTTTCGATGGCTTCTTCATTGCTCTTTCTTCTTCTCCACATCCTCTTCGTTCATTCAAGTTTTGCTGGAGATGAGAGATTGCAGAGCTTCAATTCTTCATCAATGGCGGACTGGAATGTTAAGAACGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTCGATTCGAGCATTCGCAACAGCACAGAGAGAAGGAATTTAGGGTTCTTCTCTTGCGGAACAGGAAACCCAATTGATGATTGTTGGCGATGCGACCCACGTTGGCAACTTCGCCGCAAGCACCTAGCAAATTGCGGCATTGGGTTCGGTCGCAACGCTGTCGGTGGCCGCGATGGGAGATACTATGTCGTTTCAGATCCTGGCGATGACGATCCTGTCAATCCCAGACCAGGAACCCTTCGCCATGCCGTGATTCAAGACAGGCCATTGTGGATTGTGTTCAAAAGAGATATGGTCATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAAACAATCGATGGCCGTGGTGCTAATGTCCACATTGCTTATGGCGCTTGCATTACAATCCAATTCGTAACCAATGTCATTATTCATGGTCTGCATATTCATGACTGTAAGCCAACGGGTAACGCCATGGTTCGAAGCTCCCCTAGTCATTATGGATGGAGGACAATGGCGGATGGGGATGGGGTTTCTATTTTTGGGTCGAGTCATATTTGGATTGACCATAACTCTCTTTCTAGCTGTGCTGATGGGCTCATCGACGCTGTGATGGGATCAACTGCCATTACCATTTCTAACAATTACTTCACCCACCACAATGAGGTGATACTTTTGGGACACAGTGACTCATATGTAAGAGACAAGCAAATGCAAGTGACCATTGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAAGGCAACAGATATCTTGCCCCTGCCAACCCTTTTGCCAAAGAGGTCACTAAGAGAGTTGATACGTGGAATGGTGAATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTTTGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGGGCAGCAGCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCCAAATCCTCTTCCTTGGTGGGCACCATTACTTCATCTGCAGGTGCCCTTTCTTGTCGCAGGGGATACCGTTGTTAA 1305 46.51 MAVSLRLHFSMASSLLFLLLHILFVHSSFAGDERLQSFNSSSMADWNVKNEHAVDNPEEIASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGVSIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVILLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVDTWNGEWKHWNWRSEGDLLLNGAYFTPSGAGAAASYARASSLGAKSSSLVGTITSSAGALSCRRGYRC 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9553186 9556617 + CmaCh02G016980.1 Cma02g01698 289449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01698 434 SMART amb_all 160 357 IPR002022 -
Cma02g01698 434 Gene3D - 85 427 IPR012334 -
Cma02g01698 434 Pfam Pectate lyase 168 349 IPR002022 -
Cma02g01698 434 SUPERFAMILY Pectin lyase-like 63 429 IPR011050 -
Cma02g01698 434 PRINTS Pollen allergen Amb family signature 108 125 IPR018082 -
Cma02g01698 434 PRINTS Pollen allergen Amb family signature 132 157 IPR018082 -
Cma02g01698 434 PRINTS Pollen allergen Amb family signature 168 184 IPR018082 -
Cma02g01698 434 PRINTS Pollen allergen Amb family signature 232 253 IPR018082 -
Cma02g01698 434 PRINTS Pollen allergen Amb family signature 312 331 IPR018082 -
Cma02g01698 434 PRINTS Pollen allergen Amb family signature 334 353 IPR018082 -
Cma02g01698 434 PRINTS Pollen allergen Amb family signature 376 400 IPR018082 -
Cma02g01698 434 PRINTS Pollen allergen Amb family signature 405 428 IPR018082 -
Cma02g01698 434 PANTHER PECTATE LYASE 38 431 - -
Cma02g01698 434 PANTHER PECTATE LYASE 18-RELATED 38 431 IPR045032 GO:0030570
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01698 Cma19g00136 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01698 Cma-Chr2:9553186 Cma13g00770 Cma-Chr13:6648875 0 dispersed
Cma14g01872 Cma-Chr14:13264747 Cma02g01698 Cma-Chr2:9553186 0 wgd
Cma17g00116 Cma-Chr17:574066 Cma02g01698 Cma-Chr2:9553186 0 wgd
Cma19g00136 Cma-Chr19:853549 Cma02g01698 Cma-Chr2:9553186 0 wgd
Cma02g01698 Cma-Chr2:9553186 Cma06g01265 Cma-Chr6:8417871 0 wgd
Cma02g01698 Cma-Chr2:9553186 Cma08g01035 Cma-Chr8:6481057 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01698 K01728 - csv:101207204 816.994