Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01713 ATGACAGAAATAGCCTGCTCCACAGCCGACCTCCGCCACCTCCTTAGCGGCTCAGCTAATGCCACTGCTGTCGCCGATTACATTTGCGGTCGATTCGACGCCATTTCAAGTAAATTTGTGGACACAAGTTATGCTGTTGACAACACTTACCTTCTTTTTTCAGCGTACCTTGTCTTTGCAATGCAGCTTGGATTTGCTATGCTTTGTGCTGGTTCTGTTAGAGCCAAAAATACAATGAATATTATGCTTACTAATGTTCTTGATGCTGTCACTGGCGGCGTATTTTATTATATCTTTGGATTCGCTTTGGCCTTTGGAACTCCTTCTAATGGCTTCATTGGTCATCATTATTTTGGCCTCTCGCAGTTCCCTTCTTCCTCCTTTGATTATGGGTTCTTTCTGTTTCAATGGGCTTTCGCCATTGCGGCTGCTGGGATTACCAGTGGCTCCATTGCTGAACGGACCCAATTCGTTGCTTATTTGATCTATTCCTCTGTTCTTACCGGTTTGATTTATCCAATCGTCTCTCATTGGTTTTGGTCTGCCGACGGGTGGGGCAGCGCAAGTAGGTCGGAGAATCTTCTATTTGGATCAGGAGTAATCGACTTCGCCGGCTCCGGCGTGGTCCATATGGTGGGTGGCATCGCCGGATTATGGGGCGCCGTCATTGAAGGCCCTCGAATCGGCCGGTTCGATCACGCCGGCCGGTCCGTCGCCCTCCGTGGCCACAGCGGCACATTAGTCGTTCTCGGCACTTTCCTTCTCTGGTTCGGCTGGTATGGCTTCAACCCCGGGTCGTTCCTTAACATCCTCAAAGCCTACGGCACTACCGCCGCCGCTCCCTTTTACGGCCAATGGAGCGCCATTGGTCGCACCGCCGTCACCACCACCCTCGCCGGCTGCACGGCGGCACTAACCACCCTCTTCGGCAAACGACTCCTCGTCGGCCACTGGAATGTCACCGACGTCTGCAACGGCCTGTTAGGCGGATTCGCTGCCATAACATCCGGCTGCGCGGTGGTGGATCCATGGGCGGCGATTGTTTGTGGGTTTTTCTCCGCCTGGGTTTTGATCGGATTCAACAAACTAGCGGAGAAATTGAAGTATGACGATCCGTTAGAGGCGGCGCAATTGCACGGCGGGTGTGGAGCTTGGGGGATTTTGTTCACTGGCTTGTTTGCAAAACAGGCTTATGTTAACGAGATTTATTCTGGGTTGCCGGGCCGCCCGTACGGGCTGCTGATGGGTGGTGGCGGAAGGCTGCTGGCGGCTCATATAGTGCAAATTTTGTCGATTGTTAGTTGGGTTAGCGTGACAATGGGGCTGGTATTTTGGTTGCTGCATAAGTTTCAGTTGCTGAGAATCACGGCGGAGGAGGAGATGGCCGGCATGGACTTGACAAGCCACGGCGGATTGGCTTATGTGTATAATGATGAAGAGAAGCCAATCAGAAAGTCGACGGCAATGGAGTTTTGGACCTGCATCCTCTGTCTATGTGTTGCGTTCTTCTTCATTCTGAAACTTAAATCGAAGACGGGAAATACGTCGAAGCTACCTCCGGGACCAAAGCCTCTTCCGGTGATCGGAAACCTCTTGGATCTTGGTGAGAAGCCTCACAAATCGCTCGCCGCCATGGCCAAAGTACACGGCCCTATTATGAGTATGAAACTCGGACGAGTTACAGCCGTGGTGGTTTCTTCTTCCACCATGGCTAAAGAGGTCCTACAAACGAACGACCAGTTTTTGTGTAACAGAGCCATTCCAGATGCACTCAAAGCTCACGCCCACGACGAGGTCGGGTTTCCATGGATTTCTGTTTCTCCTCTATGGAGGAACTATCGCAAAATATGCAACAACACTCTGTTCGCCGGAAAAATTCTGGACGCGAACGAGAATCTTCGCCGGAGGAAAGTGGAAGAGCTCGTTGAGATTGTCCGTAAAAGCGCGTCAAAAGGCGAGGCAGTAGATTTAGGGAGATTATTGTTCATGACGACGTTGAATCTAATCTCAAACACAGTTTTCTCGGTTGACTTAGCAGATCCGAATTCCGAATTAGCAAGGAAGTTCAAGAACTACGTATGGGGAATATTGGAAGAAGCCGGGAAACCAAATTTGAGCGATTACTTCCCCGTGTTGAGGAAGCTCGACATTCAAGGGGTAAGGAGGAGAATGAAGATTCAAATGGGAAACGTCTTGGATCTTATAGATTCAATGATCAACCAGAGGATGAAGCAGCAAGAACTGAATCCAGATTCTGTTCCCAATAACGATATGTTACACCACCTTCTTAAGAACGAGGACACCGACGCTAAACTCGATCGAAATCAAATAGAACATTTACTAGTCGTACTGTTCGTGGCCGGCTCGGATACAAGTTCAGGGACATTACAGTGGGCAATGGCGGAGCTATTGAAGAATCCAGAGAAACTAGCAAAAGCTCAAGAGGAAATCAGGCGAGTTTTGGGGAAGAGCAAACCAGTGGAGGAAGCGGACATTCCGAGGCTGCCATATCTGCAAGCAGTGGTGAAGGAAGTTTTCCGATTGCATCCAGTGGTACCATTGTTGCTACCTCGTAAGGCGCAACAAGAAGTGGAAATTGCAGGTTTCACAATCCCTAAAGATGCACAGCTTCTGGTAAATACATGGGCGATGGGAAGAGATTCGAGTGTCTGGGAGAATCCAGAATCGTTCGAGCCAGAGAGGTTTTTGGGATCGGAAATTGACGTCAGAGGGCGGAGCTTCGAAGTGATTCCGTTTGGCGGAGGGAGGAGGATATGCCCTGGACTGCCATTGGCGATGAGAATGCTGCATTTGATTTTGGGTTCGCTCATTAATTTCTTCGATTGGAAGGTTGAAGATGGATGTGAGGTGAACATGGACGACAAATTTGGGGTCACCGTGGAGATGGCCCATTCACTCAGAGCCATCCCATCCCTAATCGTTTAG 2946 49.9 MTEIACSTADLRHLLSGSANATAVADYICGRFDAISSKFVDTSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAVTGGVFYYIFGFALAFGTPSNGFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLIYPIVSHWFWSADGWGSASRSENLLFGSGVIDFAGSGVVHMVGGIAGLWGAVIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGTTAAAPFYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFFSAWVLIGFNKLAEKLKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYSGLPGRPYGLLMGGGGRLLAAHIVQILSIVSWVSVTMGLVFWLLHKFQLLRITAEEEMAGMDLTSHGGLAYVYNDEEKPIRKSTAMEFWTCILCLCVAFFFILKLKSKTGNTSKLPPGPKPLPVIGNLLDLGEKPHKSLAAMAKVHGPIMSMKLGRVTAVVVSSSTMAKEVLQTNDQFLCNRAIPDALKAHAHDEVGFPWISVSPLWRNYRKICNNTLFAGKILDANENLRRRKVEELVEIVRKSASKGEAVDLGRLLFMTTLNLISNTVFSVDLADPNSELARKFKNYVWGILEEAGKPNLSDYFPVLRKLDIQGVRRRMKIQMGNVLDLIDSMINQRMKQQELNPDSVPNNDMLHHLLKNEDTDAKLDRNQIEHLLVVLFVAGSDTSSGTLQWAMAELLKNPEKLAKAQEEIRRVLGKSKPVEEADIPRLPYLQAVVKEVFRLHPVVPLLLPRKAQQEVEIAGFTIPKDAQLLVNTWAMGRDSSVWENPESFEPERFLGSEIDVRGRSFEVIPFGGGRRICPGLPLAMRMLHLILGSLINFFDWKVEDGCEVNMDDKFGVTVEMAHSLRAIPSLIV 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9641402 9645201 - CmaCh02G017130.1 Cma02g01713 289464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01713 981 Pfam Ammonium Transporter Family 50 474 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cma02g01713 981 SUPERFAMILY Cytochrome P450 517 975 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01713 981 TIGRFAM amt: ammonium transporter 47 474 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cma02g01713 981 Pfam Cytochrome P450 519 965 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01713 981 PRINTS E-class P450 group I signature 880 904 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01713 981 PRINTS E-class P450 group I signature 546 565 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01713 981 PRINTS E-class P450 group I signature 776 793 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01713 981 PRINTS E-class P450 group I signature 796 822 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01713 981 PRINTS E-class P450 group I signature 926 949 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01713 981 PRINTS E-class P450 group I signature 839 857 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01713 981 PRINTS E-class P450 group I signature 916 926 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01713 981 PANTHER AMMONIUM TRANSPORTER 1 485 - -
Cma02g01713 981 Gene3D Cytochrome P450 504 976 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01713 981 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cma02g01713 981 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 919 928 IPR017972 GO:0005506|GO:0016705
Cma02g01713 981 Gene3D Ammonium transporter AmtB like domains 28 490 IPR029020 -
Cma02g01713 981 PANTHER AMMONIUM TRANSPORTER 1 485 - -
Cma02g01713 981 SUPERFAMILY Ammonium transporter 44 455 - -
Cma02g01713 981 PRINTS P450 superfamily signature 917 926 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01713 981 PRINTS P450 superfamily signature 926 937 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01713 981 PRINTS P450 superfamily signature 840 851 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01713 981 PRINTS P450 superfamily signature 787 804 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01713 Cma-Chr2:9641402 Cma12g00980 Cma-Chr12:7754385 0 dispersed
Cma06g00216 Cma-Chr6:1102589 Cma02g01713 Cma-Chr2:9641402 7.29E-22 dispersed
Cma14g00047 Cma-Chr14:204352 Cma02g01713 Cma-Chr2:9641402 4.89E-19 dispersed
Cma15g01410 Cma-Chr15:8894565 Cma02g01713 Cma-Chr2:9641402 3.36E-93 dispersed
Cma14g00265 Cma-Chr14:1144313 Cma02g01713 Cma-Chr2:9641402 1.88E-100 transposed
Cma14g01856 Cma-Chr14:13191687 Cma02g01713 Cma-Chr2:9641402 0 wgd
Cma19g00125 Cma-Chr19:742739 Cma02g01713 Cma-Chr2:9641402 4.95E-127 wgd
Cma02g01713 Cma-Chr2:9641402 Cma08g01041 Cma-Chr8:6522942 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01713 K03320 - csv:101223077 864.374