Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01717 ATGGGTTCGGTGAAGAAGACGATGAAGTCGAAAACCCAGATTTTGTTTTGTGTGTTCTTGTACTGTTGGATTGGTTTTTGTACTGAGTGTTCTGCTGCTGCGTTTAGTGAAGAAGCTTTGGCTTTGGTTTCGTTTAAATCAGGGCTTGTTGATCCGTTGAAGTGGCTTAGAGATTGGAAGCTGGGCGATGGAGATGGTAGATTTGCAGGGCACTGTAACTGGACTGGAGTTTCTTGCAACTCGGATGGAGCAGTTGAGAAACTGAGCCTTTCTCGTATGAATCTCAGCGGCATTTTGTCGAACGACTTGCCTACACTAACAAGGCTCAGTTTTCTTGACTTGAGTTGCAATGAATTCTCCTCTTCTTTGCCAAAATCTATTGGAAATCTCACTTCCTTGACGAGTTTTGATGTGAGTCAAAACTCTTTTGTTGGTGAGATTCCGGCGGGGTTTGGGGAGATGGTTGAATTGAAGAACTTCAATGCCTCAAGCAATAATTTCTCTGGTTTAATCCCTGAAGATCTTGGAAATGCAACTCAGCTGGAGATTTTGGATCTCCGAGGGAGTTTTCTTGAAGGGTCAATTCCTGTATCTTTCAAGAACTTGCAGAAGTTGAAGTTTCTTGGACTTTCTGGGAACAGTCTCACCGGTAGAATCCCGGTCGAGATCGGTCAGATGTCGTCGTTAGAGACGGTTATTATTGGATACAACAAGTTTGAAGGAGGGATTCCGTCAGAATTTGGAAATCTCACCAATCTGAAGTATCTTGATTTGGCTGTCGGAAAACTTGGTGGTGGCATTCCAGCTGAGCTTGGGAGGCTTAAACAGCTTGAGACATTGTTCCTTTATAAGAACGAATTCGAATCGCGAATTCCTTCGTCGATCGGCAATGCTACTTCATTAGTGTTTCTTGATCTTTCAGACAACAAATTGACAGGGGAAATCCCTGCTGAGGTTACTGAATTGAAGAACTTGCAGCTGCTGAATCTAATGTGTAACAAGCTGTCTGGTGAAGTACCTCCAGGGATTGGAGGGTTAACAAAATTACAGGTTCTAGAGCTATGGAACAACTCCTTTTTGGGCGAATTACCGGGTGATCTCGGTAAGAACTCGGAGTTGGTTTGGTTGGATGTCTCATCCAATTCATTCTGTGGTCCGATTCCTCCTTCGTTATGCAATTGGGGTAATCTAACCAAGCTTATCCTTTTCAACAATGCCTTTTCGGGTCCGATTCCGATTGGATTATCAACGTGTTCATCACTCGTTCGTGTTCGAATGCAGAACAATTTTGTATCTGGTACAATCCCAGTTGGTTTTGGGAAGCTTGGGAAGCTTGAAAGGCTAGAATTAGCAAATAATAGTCTCATTGGTAGCATCCCAAGTGATATTTCATCTTCTAAATCCCTTTCTTTTATTGATCTCTCTGAAAATAGCCTCCATTCTCCTCTTCCTTCCTCAATTCTTTCCATTCCAAATCTTCAAACCTTTATAGTCTCTGATAATCATTTAGAAGGTGAAATCCCAGACCAGTTCCAGGAGTGTCCTGCACTTTCTGTTCTTGATCTCTCTTCAAACCATTTCACAGGCAGCATTCCGGAAAGCATTGCTTCATGTGAGAGATTGGTAGCTCTGAATCTCAGAAACAATCAATTAACTGGAGAAATCCCAAAACAGATTGCAAATATGCCTTCATTGGCGGTTCTTGATCTATCCAACAACTCTCTTACAGGTAGAATACCGAATAATTTCGGTATCTCTCCCGCGCTTGAATCGTTTAATGTATCGTACAATAAGCTCGAGGGTCCAGTGCCATTAAATGGTGTGTTAAGAACAATCAATCCAAGTGATCTTCAGGGCAATGCTGGTTTATGTGGAGCTGTCCTACCTCCATGTTCACCAAATTCAGCATTCACATCAGGGCACAGGAACTCACGCTCGACGCACATTATCGCCAGTTGGGTCATCGGAATATCGTCTGTTTTAGCAATATGTATCGCTCTCTTTGGTGTTCGATCATTGTACAAGAGGTGGTACTCGACTGGAAGTTGCTTTGAAGGGCGATATGAAATGGGTGGCGGAGATTGGCCATGGAGATTGATGGCATTCCAAAGGCTTGGATTCACAAGTACTGATATTTTGGCTTGCATTAAGGAATCAAATGTGATTGGAATGGGAGCGACTGGGATTGTTTATAAAGCTGAAATGCCACAGATAAAGACAGCTGTGGCTGTAAAAAAGCTATGGAGATCAGAACCAGATCTTGAAATGGGAAGCAGTGAAGGTCTAGTAGGAGAAGTGAATTTATTGGGGAAGTTAAGGCACAGGAACATAGTTCGATTACTCGGGTTTATGCACAACGATGTCGATGTAATGATCGTCTACGAGTTTATGCAAAATGGAAGCCTTGGAGAAGCCTTGCATGGTAAACAAGCAGGGAGGCTGCTTGTGGACTGGGTTTCAAGATACAACATAGCAATTGGAGTGGCACAGGGTTTAGCTTATCTCCACCATGATTGCGACCCACCCATCATTCATCGCGACGTTAAGCCAAACAATATACTTCTAGATTCAAATCTCGAAGCACGGTTAGCTGATTTCGGGTTGGCGCGAATGATGGCTCGTAAGAACGAGACGGTTTCAATGGTAGCTGGATCGTATGGCTACATTGCCCCCGAATATGGATACACTTTAAAGGTGGATGAAAAGATCGACATTTACAGCTACGGAGTTGTTCTTTTGGAGCTGTTGACGGGGAAGAAGCCATTAGATTCCGAGTTCGGAGAATCGGTGGACATTGTTGAATGGATTAGAAGGAAGGTTAGAGACAACAGACGTTTAGAAGAAGCATTAGATCCAAATCTGGGAAATTTCAAGCATGTTCAAGAAGAAATGCTGTTTGTGCTTAGAATTGCTCTTCTCTGCACTGCAAAGCATCCAAAAGACAGGCCTTCCATGAGAGATATAATAACAATGCTTGGAGAAGCAAAACCAAGGAGAAAAAGCAACAGTAATGGCAATGAAGGATTTGGAACTAACAAAGACAAAGAGAAGCCAGTTTTCAACACCTCCCCTGTAAATGGCCTTCTCTAG 3090 43.01 MGSVKKTMKSKTQILFCVFLYCWIGFCTECSAAAFSEEALALVSFKSGLVDPLKWLRDWKLGDGDGRFAGHCNWTGVSCNSDGAVEKLSLSRMNLSGILSNDLPTLTRLSFLDLSCNEFSSSLPKSIGNLTSLTSFDVSQNSFVGEIPAGFGEMVELKNFNASSNNFSGLIPEDLGNATQLEILDLRGSFLEGSIPVSFKNLQKLKFLGLSGNSLTGRIPVEIGQMSSLETVIIGYNKFEGGIPSEFGNLTNLKYLDLAVGKLGGGIPAELGRLKQLETLFLYKNEFESRIPSSIGNATSLVFLDLSDNKLTGEIPAEVTELKNLQLLNLMCNKLSGEVPPGIGGLTKLQVLELWNNSFLGELPGDLGKNSELVWLDVSSNSFCGPIPPSLCNWGNLTKLILFNNAFSGPIPIGLSTCSSLVRVRMQNNFVSGTIPVGFGKLGKLERLELANNSLIGSIPSDISSSKSLSFIDLSENSLHSPLPSSILSIPNLQTFIVSDNHLEGEIPDQFQECPALSVLDLSSNHFTGSIPESIASCERLVALNLRNNQLTGEIPKQIANMPSLAVLDLSNNSLTGRIPNNFGISPALESFNVSYNKLEGPVPLNGVLRTINPSDLQGNAGLCGAVLPPCSPNSAFTSGHRNSRSTHIIASWVIGISSVLAICIALFGVRSLYKRWYSTGSCFEGRYEMGGGDWPWRLMAFQRLGFTSTDILACIKESNVIGMGATGIVYKAEMPQIKTAVAVKKLWRSEPDLEMGSSEGLVGEVNLLGKLRHRNIVRLLGFMHNDVDVMIVYEFMQNGSLGEALHGKQAGRLLVDWVSRYNIAIGVAQGLAYLHHDCDPPIIHRDVKPNNILLDSNLEARLADFGLARMMARKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKKPLDSEFGESVDIVEWIRRKVRDNRRLEEALDPNLGNFKHVQEEMLFVLRIALLCTAKHPKDRPSMRDIITMLGEAKPRRKSNSNGNEGFGTNKDKEKPVFNTSPVNGLL 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9672648 9676368 + CmaCh02G017170.1 Cma02g01717 289468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01717 1029 Pfam Leucine rich repeat N-terminal domain 37 80 IPR013210 -
Cma02g01717 1029 Pfam Protein kinase domain 718 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01717 1029 Pfam Leucine rich repeat 491 551 IPR001611 GO:0005515
Cma02g01717 1029 ProSitePatterns Protein kinases ATP-binding region signature. 722 746 IPR017441 GO:0005524
Cma02g01717 1029 SUPERFAMILY RNI-like 87 383 - -
Cma02g01717 1029 SUPERFAMILY Protein kinase-like (PK-like) 714 992 IPR011009 -
Cma02g01717 1029 PRINTS Leucine-rich repeat signature 301 314 - -
Cma02g01717 1029 PRINTS Leucine-rich repeat signature 562 575 - -
Cma02g01717 1029 Gene3D Ribonuclease Inhibitor 37 154 IPR032675 -
Cma02g01717 1029 Gene3D Ribonuclease Inhibitor 155 241 IPR032675 -
Cma02g01717 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Cma02g01717 1029 MobiDBLite consensus disorder prediction 993 1029 - -
Cma02g01717 1029 ProSiteProfiles Protein kinase domain profile. 716 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01717 1029 Pfam Leucine Rich Repeat 565 583 IPR001611 GO:0005515
Cma02g01717 1029 Pfam Leucine Rich Repeat 180 202 IPR001611 GO:0005515
Cma02g01717 1029 SMART serkin_6 716 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01717 1029 PANTHER UNNAMED PRODUCT 26 1006 - -
Cma02g01717 1029 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 26 1006 - -
Cma02g01717 1029 SMART LRR_typ_2 274 298 IPR003591 -
Cma02g01717 1029 SMART LRR_typ_2 442 466 IPR003591 -
Cma02g01717 1029 SMART LRR_typ_2 322 345 IPR003591 -
Cma02g01717 1029 SMART LRR_typ_2 514 538 IPR003591 -
Cma02g01717 1029 SMART LRR_typ_2 346 370 IPR003591 -
Cma02g01717 1029 SMART LRR_typ_2 106 130 IPR003591 -
Cma02g01717 1029 SMART LRR_typ_2 202 226 IPR003591 -
Cma02g01717 1029 SMART LRR_typ_2 562 586 IPR003591 -
Cma02g01717 1029 Gene3D Ribonuclease Inhibitor 242 389 IPR032675 -
Cma02g01717 1029 Gene3D Phosphorylase Kinase; domain 1 716 800 - -
Cma02g01717 1029 Gene3D Transferase(Phosphotransferase) domain 1 801 1016 - -
Cma02g01717 1029 SUPERFAMILY RNI-like 315 603 - -
Cma02g01717 1029 Gene3D Ribonuclease Inhibitor 390 632 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01440 Cma-Chr1:10139451 Cma02g01717 Cma-Chr2:9672648 6.85E-165 dispersed
Cma02g01717 Cma-Chr2:9672648 Cma04g00349 Cma-Chr4:1699886 0 dispersed
Cma10g00826 Cma-Chr10:3848795 Cma02g01717 Cma-Chr2:9672648 3.50E-71 dispersed
Cma11g00059 Cma-Chr11:301170 Cma02g01717 Cma-Chr2:9672648 5.15E-06 transposed
Cma12g01168 Cma-Chr12:9214663 Cma02g01717 Cma-Chr2:9672648 0 wgd
Cma02g01717 Cma-Chr2:9672648 Cma05g01249 Cma-Chr5:9596734 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68382 PF00069 Pkinase 2.70E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01717 - - cpep:111794871 1978.76