Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01732 ATGTGTGCCACGTGGCAAAAGGTAAGCCTCAGACAACGTGATCTTTGGCTGCTGTCAAACAATATGAAGAGTGATGTTAAGATAAAATGGCGGCGGAGAGCTGGAAAAGGGGAGAACATTAGGAAGATAATGAAGTGTTTATGTTCTGGAGAGAAAAGAGCTGGTGATGATATGATTCCTGCATCAGAATTGCAGTCAACATTGGAGAATTCAGCAAGCGAACACTCCTCACGAATCGGCGGGATTGTCATGAAGCCAGAAATTGGCAATATAGAAGAAGCCGAGTCTTCGCTTCGTGAGAGCGGTTGCTTGAATTATGAGGAAGCAAGAGCATTGCTGGGAAGATATGAATATCAAAAAGGAAACATCGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATCACTGCAGTAACTAGTAAGATAATGATCTCCATTGCTAGAACAGGACACCGTGCAAGGAGACGATCGCAACGTTTTAGTGACCCACCAATGTCTATGCATGCTGTTAGTTTACTGTTGGAAGCCATCTTTTTAAAAGCAAAATCATTGCAAGGCCTTGGGAGGTTTGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGGTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGACACAGTAACGAAAGCCGTTGAGTTGATACCAGAACTATGGAAACAAGGCGATTCTTCTCAAGAAGCGATCCTTTCATATCGGCGGGCACTCCTTCATCAATGGAACCTCGATGCGGGAACCACCGCTCGAATTCAGAAAGAGTTTGCTATTTTTCTTCTGTACAGTGGAAATGAAGCATACCCTCCAAATCTCCGGTCTCAAATGGACAGCTCATTTGTACCAAAAAACAATAATGAAGAAGCTATACTCATATTTATGATACTACTTAGAAAAGTTGTTCTGAAGAGGATTGATTGGGATCCATCAATCTTGGATCACCTCTCCTTTGCACTAACAATATCAGGGGATACAAGCGCTTTGGCAGGTCAAGTAGAGGAATTGCCTCCTGGGATTCTGCATAGAAACGATAGGTACCATACTCTAGCTCTTTGTTACTATGGAGCTGGAGAAGACTTGGCTGCTTTGAATCTTTTGAGGAAATTGTTGGGCAGTCATGAGGATTCTAAATCTCTTCCTGCTTTATTAATGGCGTCAAAGATTTGTGGAGAGCACGGTGATCATGCTGAAGAAGGAACACGTTATGCTCGTCGAGCTCTTCAAAAGTTGGATGCTGGATGTGATCAATTGATAGGTGTTGCCAACTGTTTGTTGGGTGTCTCTCTGTCTGTATATTCTAAATCAGCAGTTGCAGATTCTGAGCGGTCCTCCAGACAATCTGAGGCGATAGAGGCCCTGGAAGCTGCACGGAAGAAGACTCGAATGACCAATGCTAATGTTCTCTACCATTTGAGTGTTGAATATGCTGATGAGAGGAAGTTGGATTCAGCACTTCATTTTGCAAAGAAGTGTCTCAAACTGGAAGGTGGATCTAATATTAGAACTTGGTTACTGGTGGCTAGGATTCTCTCTGCCCTGAAACGATTCGTGGATGGCGAAAATATTATAAATGCAGCTCTGGAGCAGACTGGGAAATGGGATCAAGGCGAATTGCTTCGAACAAAAGCAAAGCTTTTGATTGCACAAGATGAGCTGAAAGGTGCTATTGGGACTTATACTCAGTTACTCGCTGTTTTTCAAGTTCAGAGTAAAAGTTTTGGCTTGGGAGATAAGAAGCTACATAAGAGCAGCAGAAATTGTATCAGAAGTTTGCAATTGGAAGTGTGGCATGATTTAGCTCTAGTCTATATAAGGCTTTCACAATGGCACAATGCCGAGGCTTGCCTTTCCAAGTCAAAGGCCATCCATTCTCATTCGGCATCTAGATGTCATCTCACAGGTATGCTTTATGAAGCAAAAGGATTGTATAAGGAAGCTTTGAAAGCTTTTATGGCTGCTCTGGACATCGATCCCGTTCATGTCCCGAGCTTGGTTTCGTCTTCCGTAGTTATCAGACGTCTTGGCCACCAATCGCACCCCGTTGTTCGCAGCTTTTTGATGGATGCTGTACGTCTCAACCAGACAAACCACGCTGCGTGGTACAATCTCGGGCTATTCTACAGAGCTGAAGGAACCAAATCTTCATTGGCAGAAGCTGTTGAATGTTTTGAGGCTGCAACATTTCTTGAAGAGACTGCTCCTGTCGAACCCTTCAGATAA 2268 43.34 MCATWQKVSLRQRDLWLLSNNMKSDVKIKWRRRAGKGENIRKIMKCLCSGEKRAGDDMIPASELQSTLENSASEHSSRIGGIVMKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAVTSKIMISIARTGHRARRRSQRFSDPPMSMHAVSLLLEAIFLKAKSLQGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQDTVTKAVELIPELWKQGDSSQEAILSYRRALLHQWNLDAGTTARIQKEFAIFLLYSGNEAYPPNLRSQMDSSFVPKNNNEEAILIFMILLRKVVLKRIDWDPSILDHLSFALTISGDTSALAGQVEELPPGILHRNDRYHTLALCYYGAGEDLAALNLLRKLLGSHEDSKSLPALLMASKICGEHGDHAEEGTRYARRALQKLDAGCDQLIGVANCLLGVSLSVYSKSAVADSERSSRQSEAIEALEAARKKTRMTNANVLYHLSVEYADERKLDSALHFAKKCLKLEGGSNIRTWLLVARILSALKRFVDGENIINAALEQTGKWDQGELLRTKAKLLIAQDELKGAIGTYTQLLAVFQVQSKSFGLGDKKLHKSSRNCIRSLQLEVWHDLALVYIRLSQWHNAEACLSKSKAIHSHSASRCHLTGMLYEAKGLYKEALKAFMAALDIDPVHVPSLVSSSVVIRRLGHQSHPVVRSFLMDAVRLNQTNHAAWYNLGLFYRAEGTKSSLAEAVECFEAATFLEETAPVEPFR 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9733140 9737837 - CmaCh02G017320.1 Cma02g01732 289483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01732 755 SMART tpr_5 643 676 IPR019734 GO:0005515
Cma02g01732 755 SMART tpr_5 481 514 IPR019734 GO:0005515
Cma02g01732 755 SMART tpr_5 516 549 IPR019734 GO:0005515
Cma02g01732 755 SMART tpr_5 713 749 IPR019734 GO:0005515
Cma02g01732 755 SMART tpr_5 174 207 IPR019734 GO:0005515
Cma02g01732 755 SMART tpr_5 552 585 IPR019734 GO:0005515
Cma02g01732 755 SMART tpr_5 609 642 IPR019734 GO:0005515
Cma02g01732 755 Pfam Tetratricopeptide repeat 645 675 IPR019734 GO:0005515
Cma02g01732 755 Gene3D Tetratricopeptide repeat domain 597 749 IPR011990 GO:0005515
Cma02g01732 755 SUPERFAMILY TPR-like 360 583 IPR011990 GO:0005515
Cma02g01732 755 SUPERFAMILY TPR-like 553 727 IPR011990 GO:0005515
Cma02g01732 755 Gene3D Tetratricopeptide repeat domain 82 596 IPR011990 GO:0005515
Cma02g01732 755 ProSiteProfiles TPR repeat profile. 643 676 IPR019734 GO:0005515
Cma02g01732 755 PANTHER PROTEIN NPG1 34 755 IPR043376 -
Cma02g01732 755 PANTHER PROTEIN NPGR2 34 755 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01732 Cma19g00105 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01732 Cma-Chr2:9733140 Cma09g00720 Cma-Chr9:3420603 0 dispersed
Cma14g01828 Cma-Chr14:13064593 Cma02g01732 Cma-Chr2:9733140 0 wgd
Cma19g00105 Cma-Chr19:634173 Cma02g01732 Cma-Chr2:9733140 0 wgd
Cma02g01732 Cma-Chr2:9733140 Cma06g01307 Cma-Chr6:8641597 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01732 K21843 - csv:101223229 1202.96