Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01751 ATGGAATCCTATTACTTTTCGTTCTCCGATTCAGATTTCTCGACGGAATGTTCACTCGGATCACCGGAGGAATTGTCGTTTTCATGGAGCGATTTTTTCTCGATAAACAGTGTGCTAGAAAACTCACTCTCACTGCCGGATGAGTTTGTCGGCCATCAACCATCGGAATCGGAATTGAAGATTGCGGTGAAGGAAGAAATCGAAGTGAGTTCGATTGATTTGGAGAGGGAGAAAGAGAGAAAAACGACGGAGAAGAATTACAGAGGAGTGAGGCGGCGGCCATGGGGGAAGTACGCGGCGGAGATTAGGGATTCGACAAGGCATGGAGTTAGGGTTTGGCTTGGGACTTTCGATAGTGCCGAAGCCGCGGCTTTAGCTTACGATCAAGCGGCGTATTCGATGAGAGGAGCACTGGCGGTGCTGAATTTTCCGGTGGAAATGGTGAGGGAATCGCTGCAGGAGATTAAGTATGAATTGGAAGAAGGATTGTCACCAGTGGTGGCTTTGAAGAGAAAACACTCACTAAGAAGGAAGTCAGGGGCGGCGGCGAAAATCCAGGGGGTGGCGGAGACGAAGAAGATGAAGAAAAAGAAGAATGTGGTAGTGATTTTGGAAGATTTGGGAACAGAGTATTTGGAAGAACTTTTGATGCTAAGTTCATGTGAGAGTAGTAGTAGTAGTAGTAGTAGTATGAGTCCTTTCTGA 705 46.95 MESYYFSFSDSDFSTECSLGSPEELSFSWSDFFSINSVLENSLSLPDEFVGHQPSESELKIAVKEEIEVSSIDLEREKERKTTEKNYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAYSMRGALAVLNFPVEMVRESLQEIKYELEEGLSPVVALKRKHSLRRKSGAAAKIQGVAETKKMKKKKNVVVILEDLGTEYLEELLMLSSCESSSSSSSSMSPF 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9801242 9801946 - CmaCh02G017510.1 Cma02g01751 289502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01751 234 CDD AP2 85 145 IPR001471 GO:0003700|GO:0006355
Cma02g01751 234 PANTHER DNA-BINDING DOMAIN 55 218 IPR044808 GO:0003700|GO:0009873
Cma02g01751 234 Gene3D AP2/ERF domain 85 146 IPR036955 GO:0003700|GO:0006355
Cma02g01751 234 Pfam AP2 domain 86 136 IPR001471 GO:0003700|GO:0006355
Cma02g01751 234 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
Cma02g01751 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 55 218 - -
Cma02g01751 234 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Cma02g01751 234 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Cma02g01751 234 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Cma02g01751 234 SUPERFAMILY DNA-binding domain 86 146 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01751 Cma08g00294 CCT
Cma02g01751 Cma19g00084 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01751 Cma-Chr2:9801242 Cma03g01306 Cma-Chr3:8452512 2.80E-31 dispersed
Cma14g01810 Cma-Chr14:12979490 Cma02g01751 Cma-Chr2:9801242 3.52E-43 wgd
Cma17g00167 Cma-Chr17:862949 Cma02g01751 Cma-Chr2:9801242 3.17E-50 wgd
Cma19g00084 Cma-Chr19:506769 Cma02g01751 Cma-Chr2:9801242 2.46E-98 wgd
Cma02g01751 Cma-Chr2:9801242 Cma06g01330 Cma-Chr6:8751295 5.22E-45 wgd
Cma02g01751 Cma-Chr2:9801242 Cma08g01086 Cma-Chr8:6782139 9.06E-46 wgd
Cma02g01751 Cma-Chr2:9801242 Cma08g00294 Cma-Chr8:1686346 8.91E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34565 PF00847 AP2 2.70E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01751 K14516 - csv:101220325 290.812