Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01755 ATGACAGGCTCTGGTTCTCCATGTGGAGCCTGCAAGTTCTTGAGAAGAAAATGTGTCAGAGGCTGTGTTTTTGCTCCTTACTTCTGCCATGAACAAGGAGCCTCTCACTTTGCCGCCATTCATAAGGTGTTTGGAGCCAGCAATGTGTCTAAGCTTCTTGCTCGCCTCCCTGTTACTGAGCGCTGTGAGGCTGCTGTTACCATCTCTTATGAAGCTCAAGCTCGCCTTCAAGATCCCATCTATGGCTGCGTTTCTCACATCTTTGCCCTTCAACAACAGGTTGTGAGTCTTCAGGCACAGCTTGCTTCTCTGAAGGAACAAGCAGCAGAGAGCATGATGAACAGCTCAAGTAACAACGGGGGTGGGGTGAATGAGAAGAATTGCAGAAAGATTCCTTCTCATTTCCAAGATCTCCATAACTGGTTTCAATCGGATCATTCGAACGTAACGCCTGGATTCAACCCGAACCCGACTCAAGATTCCGCATCCAACCCTTATTATGATGAGAACTATCGCATTATGATCAATTCCCAGTCCAATGGGAACTATGAACATCACATGGCAAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGACTATTCCATGTATACTCTTGATCACCTGCATTCAAATGTTCAACAATGGAGCTTCAATGAGTCGCCTGATGATTTACAATCAGTCGCTTTTGGTCATGCTCGACGTTGGTAA 723 45.64 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGASHFAAIHKVFGASNVSKLLARLPVTERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESMMNSSSNNGGGVNEKNCRKIPSHFQDLHNWFQSDHSNVTPGFNPNPTQDSASNPYYDENYRIMINSQSNGNYEHHMAKMEESGSYGSFEETSDYSMYTLDHLHSNVQQWSFNESPDDLQSVAFGHARRW 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9825835 9826687 + CmaCh02G017550.1 Cma02g01755 289506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01755 240 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Cma02g01755 240 Coils Coil 87 114 - -
Cma02g01755 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 238 - -
Cma02g01755 240 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Cma02g01755 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 238 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01755 Cma19g00080 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01755 Cma-Chr2:9825835 Cma19g00080 Cma-Chr19:461193 3.54E-153 dispersed
Cma02g01755 Cma-Chr2:9825835 Cma02g01756 Cma-Chr2:9827341 5.21E-51 tandem
Cma08g00271 Cma-Chr8:1580070 Cma02g01755 Cma-Chr2:9825835 2.62E-58 transposed
Cma19g00079 Cma-Chr19:455219 Cma02g01755 Cma-Chr2:9825835 8.61E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34566 PF03195 LOB 6.40E-36 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01755 K13945 - csv:101214764 396.741