Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01756 ATGGCGTCTTCCACTACAGCCAATTCTCACGCCTCTGCCTCTGCCTCTGCCTCCCCTTGCGGAGCATGCAAGTTTCTGCGACGAAAGTGTGCGCCTGATTGCATCTTTGCTCCTTACTTTTGCTCTGATCAAAGCGCTGCCAGATTTGCCGCCATTCATAAGGTGTTTGGAGCCAGTAATGTGTCCAAGTTGCTCCTCCACGTCCCTGTTCCTCATCGCTGTGAGGCTGTTGTCACTATTGCCTATGAAGCTCAAGCTCGCATTCGTGACCCTGTTTATGGCTGTGTTGCTCATCTTTTTGCTCTCCAACAACAGGTGGCGTACTTGCAAACACAGCTGATGCAAGCCAGGGCTCAACTTGCACAAACCCACATGCAGATTCAATGGACCGGAATCCCAAAGTTTCCAAATTATCAATCCCAAGTAACCAACTCTGCAGTTTCCCCACAGACCTCTCTGGAATCAGCTGCCAACAATGATGAAGCTCAATTTCAACAATTTCCTACAAAAATTCCAGCTTCTTGTCATGGTGATGTTGGAGAGCTCCAAGCTTTAGCTCTCAGAATGATGAGAAACTAA 579 48.19 MASSTTANSHASASASASPCGACKFLRRKCAPDCIFAPYFCSDQSAARFAAIHKVFGASNVSKLLLHVPVPHRCEAVVTIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLAQTHMQIQWTGIPKFPNYQSQVTNSAVSPQTSLESAANNDEAQFQQFPTKIPASCHGDVGELQALALRMMRN 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9827341 9828032 - CmaCh02G017560.1 Cma02g01756 289507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01756 192 Pfam Lateral organ boundaries (LOB) domain 19 116 IPR004883 -
Cma02g01756 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 12 191 - -
Cma02g01756 192 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
Cma02g01756 192 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 191 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01756 Cma19g00079 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01756 Cma-Chr2:9827341 Cma19g00079 Cma-Chr19:455219 1.95E-92 dispersed
Cma02g01755 Cma-Chr2:9825835 Cma02g01756 Cma-Chr2:9827341 5.21E-51 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34567 PF03195 LOB 2.70E-36 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01756 K13944 - csv:101214521 256.529