Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g01756 | ATGGCGTCTTCCACTACAGCCAATTCTCACGCCTCTGCCTCTGCCTCTGCCTCCCCTTGCGGAGCATGCAAGTTTCTGCGACGAAAGTGTGCGCCTGATTGCATCTTTGCTCCTTACTTTTGCTCTGATCAAAGCGCTGCCAGATTTGCCGCCATTCATAAGGTGTTTGGAGCCAGTAATGTGTCCAAGTTGCTCCTCCACGTCCCTGTTCCTCATCGCTGTGAGGCTGTTGTCACTATTGCCTATGAAGCTCAAGCTCGCATTCGTGACCCTGTTTATGGCTGTGTTGCTCATCTTTTTGCTCTCCAACAACAGGTGGCGTACTTGCAAACACAGCTGATGCAAGCCAGGGCTCAACTTGCACAAACCCACATGCAGATTCAATGGACCGGAATCCCAAAGTTTCCAAATTATCAATCCCAAGTAACCAACTCTGCAGTTTCCCCACAGACCTCTCTGGAATCAGCTGCCAACAATGATGAAGCTCAATTTCAACAATTTCCTACAAAAATTCCAGCTTCTTGTCATGGTGATGTTGGAGAGCTCCAAGCTTTAGCTCTCAGAATGATGAGAAACTAA | 579 | 48.19 | MASSTTANSHASASASASPCGACKFLRRKCAPDCIFAPYFCSDQSAARFAAIHKVFGASNVSKLLLHVPVPHRCEAVVTIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLAQTHMQIQWTGIPKFPNYQSQVTNSAVSPQTSLESAANNDEAQFQQFPTKIPASCHGDVGELQALALRMMRN | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 9827341 | 9828032 | - | CmaCh02G017560.1 | Cma02g01756 | 289507 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g01756 | 192 | Pfam | Lateral organ boundaries (LOB) domain | 19 | 116 | IPR004883 | - | |
Cma02g01756 | 192 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 16 | 12 | 191 | - | - | |
Cma02g01756 | 192 | ProSiteProfiles | LOB domain profile. | 18 | 120 | IPR004883 | - | |
Cma02g01756 | 192 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 12 | 191 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g01756 | Cma19g00079 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01756 | Cma-Chr2:9827341 | Cma19g00079 | Cma-Chr19:455219 | 1.95E-92 | dispersed | |
Cma02g01755 | Cma-Chr2:9825835 | Cma02g01756 | Cma-Chr2:9827341 | 5.21E-51 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34567 | PF03195 | LOB | 2.70E-36 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g01756 | K13944 | - | csv:101214521 | 256.529 |