Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01770 ATGGAAGAGGTTGAAGAAGCTAACAGAGCTGCCATACAGACCTGCCATGGAGTTCTCAATCTCTTGGCTCATCAACCTCCTCACTTGATCCCATTGACGGTGGACACTGGAGAAGCAGTTTCCAAGTTCAGAAAAGTGGTTTCTCTTTTGTATACTGGGTTTGGTCATGCAAGAGCCAGACGGCTCAACAACATTCCTTCTCTCCCTCTGCCCCATAACGCTCTCTTGGATTCCCCAACTCACACAACGCATCCTCCAACCAAAACTCTTCACCCTTTTCACCCTCCTTTCAACACTCAAGTTTCTATTTTTCTGGGAAACCCACACTTGGGATTGCCTCACAATCATATCCAAATCCCCAAACAACCTCCATCTTTAAGCTTCAGCTTCCCACAACAACAACAGAAACAGAGGATGTTGGCCCATCACAACCCGACGAATCTCAATTTTGACAACTCCAATTGCTCACTCACAATGCCATCACCTACATCTTTCATTTCTTCACTCAGTATGGACGAAGGGAGCTTCCAATGCGGAACCACTGCCAAATGCCATTGCTCCAACAAGAGGAAACATAGAGTGAAGAGATCAATCAAGGTGCCCGCCATAAGCAACAAGCTTGCTGATATCCCTTCCGATGAGTATTCATGGAGGAAATACGGGCAGAAGCCGATTAAGGGCTCCCCTCATCCAAGGGGTTACTACAAATGCAGCAGCATGAGAGGTTGTCCCGCGAGGAAGCACGTGGAGCGGTGCCTACAACAGCCATCCATGCTCATTGTAACCTACGAAGGGGAACACAGCCACCCCACCATTAAGATATCAAATAGCTTCCATCTCTTGGCTGTACATCCCAATTTCATCCCGATTGTTTTCGCTTGCCAACTCAATTCTTCTGTTCGTAGACCCTAA 912 47.37 MEEVEEANRAAIQTCHGVLNLLAHQPPHLIPLTVDTGEAVSKFRKVVSLLYTGFGHARARRLNNIPSLPLPHNALLDSPTHTTHPPTKTLHPFHPPFNTQVSIFLGNPHLGLPHNHIQIPKQPPSLSFSFPQQQQKQRMLAHHNPTNLNFDNSNCSLTMPSPTSFISSLSMDEGSFQCGTTAKCHCSNKRKHRVKRSIKVPAISNKLADIPSDEYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLQQPSMLIVTYEGEHSHPTIKISNSFHLLAVHPNFIPIVFACQLNSSVRRP 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9870246 9873833 - CmaCh02G017700.1 Cma02g01770 289521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01770 303 Gene3D WRKY domain 195 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma02g01770 303 Pfam WRKY DNA -binding domain 213 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g01770 303 Pfam Plant zinc cluster domain 176 209 IPR018872 -
Cma02g01770 303 ProSiteProfiles WRKY domain profile. 206 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g01770 303 SMART WRKY_cls 211 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g01770 303 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 172 276 IPR044810 GO:0003700
Cma02g01770 303 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 173 IPR044810 GO:0003700
Cma02g01770 303 PANTHER WRKY TRANSCRIPTION FACTOR 74-RELATED 172 276 - -
Cma02g01770 303 PANTHER WRKY TRANSCRIPTION FACTOR 74-RELATED 2 173 - -
Cma02g01770 303 SUPERFAMILY WRKY DNA-binding domain 209 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01770 Cma-Chr2:9870246 Cma01g01820 Cma-Chr1:12075582 2.27E-54 dispersed
Cma17g01219 Cma-Chr17:8415383 Cma02g01770 Cma-Chr2:9870246 8.41E-82 wgd
Cma19g00062 Cma-Chr19:331030 Cma02g01770 Cma-Chr2:9870246 2.05E-119 wgd
Cma02g01770 Cma-Chr2:9870246 Cma08g00314 Cma-Chr8:1790125 5.32E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34571 PF03106 WRKY 5.70E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01770 - - cmax:111490800 537.339