Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01782 ATGGCTTTCCAGAAGATCGAACTAACCCAATTATATTCGTTTCTTCTATGGTTTACTGTGTACGCGATAACATACTGCTCCTCGGAATCGTCGACGTGCTTGATGGTGTACAAGGAAGGCGGCGCTCCCGCGGTATTTCAATCCCCGAAATGTCCTCTCTGGAAGCTCTCTGACTACACTTTTCAATCTCCCAACGCCCCCCATTGTCAAATTGCAATGCATCAAGGTCGACGAAAGTATCAGGAGGATCGCACTCTCTGTGCTCTAGATATTCGAATTCCCTTCCCAAGTAAAACAGGTATTATGGAGGTACCTGTGGGAATCATAGCAGTTTTTGATGGTCATAACGGAGCTGAAGCCAGTGAGATGGCTTCAAAGATTTTGTTGGAGTATTTTGTGGTGCATACTTATTTTCTTCTTGATGCCACTTATTCTGGAATTTTCAAGAGACCCATTAACTCATTTTCGAATGAGAAGGAACATGGTACCAAGTTTGATCAGTTCATTTGGAATGTGGAAATTAGTAACCGTGATCGGGAACTTGGAAGGCGTAAATACCTACTTCCAGCAGATTTTGTTGATGACTACCATTTGGAAATTTTGAAAGAAGCACTGTTGAGAGCTATACAAGACATTGATAAAACGTTTTCCAAGGAAGCACATAAAAATAATCTGGTTTCGGGTTCTACTGCTACTGTTATATTATTGGCAGATGCACAAATTTTGGTTGCAAACATTGGTGACTCGAAGACTTTTTTGTGCTCTGAAAAATTTCAGTCACCTGCTGAGGCTAAAGCTACCTTTTTACGGTTATACAAGCAAAAAAGATATAGTGGTGCCTCACGTGCAAGGGGCTATGGAAATTCTAAACCAGACTCATTTGATGGGCTGACACATTTTTTTGCCAAAGAATTGACTAGGGATCACCATCCAGATAGAGAGGATGAAAGATCTAGGGTGGAGATTGCTGGGGGTCACGTTGTTGATTGGGGTGGTGTACCTCGAGTAAATGGTCAGTTGGCTATAAGCAGAGCAATTGGTGATGTGTCTTTTAAAAGCTATGGAGTTATATCTGCACCAGAAGTGACTGACTGGCAACCTTTGTCTACCAACGATAGCTATTTGGTGGTTTCATCTGATGGCATTTTTGAGAAGTTAAGCTCACAAGATGTTTGTGACTTGTTGTGGGAAATACACAATGATCGTATGTCAATTTCCGAGTATTCTCCTTCATGCTCATACTCATTGGCGGAATGCATCGTTAGTACGGCCTTTGAAAGAGGCAGTATGGATAACATGGCTGCTATTGTGGTTCCTTTAAGATCTGCTATTTCTTCTCAGAGGTTTCAGGAGGGGAGGTTTGTTGTGCAGAGGGACTCAAGTTTTCCCATATCTGGAATAGAAAAGCTTATTAAAGAGCACTCAGCCAATAGCTTCTCTTCCAATGCTGTGCAATTGGAGCATTCTCATCCAGTCATGTCCAAGTTCAAGAGACTATTAGTTGAAGGAAGACACAATAAGCTGGGATGTTTTTATCTGTCTGAGAATCTGGATGAATACAAGGATTATGTGTTGAGGACTCAAACTGATGAAGAAGAATATTTATGTGATCTACCCCATGCTCTTCCTGAGTCCCTCAATCAGCCATATGGTGGATCTTTAAATGTGTACAATGACCAAAGCTTGTGCTTTCATCTTGGAGCTAAAGATCAGTGCTTTCATCCTGAAGGCTTTGCTAGTTTTATTGGTTTGCTTGAATCAATTCCTTTCCACGATCCTGGTTCAGATTATCAACTATTTGAGCATCCACCACCTATATTGAGGTATGTGTTAAAGAAAAGGTTTGGTCAGGGTTCCTATGGCGAAGTATGGCTGGCTTTTCATGGGAACTGCCAGGAAGCTTTTACTCCAGTAGGAGAGAATATTTATGATTCGTGCAACTCATCTTTTGGAGATGCCAATGCCAGAAATGGTAGATACTCTTCAAATAGTTCTCAAGCCTATGCTCTGGAGGATAACGTGTTCATCATGAAACGTGTAATGGTTGAAAGAGGTGCTGGAGTCTATTTGAGTGGCTTACGGGAGAAATATTTTGGTGAAATATTTTTTAATGCTTCTACACGACTTGAAGATGTGTTATCAACTGGAACATCAAACTTTGTCTTTGAAAAGTCACCATGGGGATCTAAAGACTTGTTGGTAAAGGATGAATCCCTGAGTTATAAATTAGGGGAAACTAGGCAGTTTAAAAATGCTTTCCCGAATCAGTTTGGACCAAAGAGTGTTATGTATGAAGAAGGTTTAAACCATATAGTGAGATTTGTAGAATCTTTTGAATCCCGGTCTAACGAAATATGGCTTGTATTTCATTACGAAGGCATATCCCTCTCAAAGCTCATATATTCTATTGAAGATGCTGATGAGGAAAAAGTTGAACAAAAAAACCATGTTCAAATTTTACAACCTTCTAAGTGGTGGCATTGGTTGAAAACAACAGAAGCAGGACAAGAGGAAATGAAAAGTTTGATACGTCAGCTGTTGATGGCTCTCAAGTCTTGTCATGATCGCAATATCACTCACAGGGATATAAAACCTGAGAACATGGTGATATGCTTTGAAGATCAGGCTACTGGAAAATGCTTGAATGGAAGTCGAAGGGGGGATGAGAACTTCTCTACTAAAATGCGCATTATTGACTTTGGTAGTGCTATTGATGAATTCACAGTCAAGCATCTATATGGGTCTGCTGGGCCTTCCAGAGTGGAACAAACTTATGATTACACACCTCCTGAAGCCTTGCTTAATTCAAGTTGGTATCAGGAGATGTCAAGTGCAACTTTGAAGTATGATATGTGGAGCGTTGGTGTAGTGATGCTAGAATTGATCTTAGGATCACCTAATGTTTTTCAGGTAGGTGATTTAACCCGAGTTCTTTTGGACCAGCATCTTGAGGGTTGGAATGAAGGCTTAAAGCAGCTAGCATACAAGCTTAGGTCGTTCATGGAGTTGTGCATTTTAATTCCTGGGAGTCCCTCAAAAAGTTATAAAAAAAATGTTCATCAAGGAGGTTCACCAGCATCCTGGAAATGCTCTGAAGAAGTTTTTGCCCACCAAATAAAGAGTAGAGATCCTCTTAAACTAGGGTTTCCAAATGTTTGGGCTCTACGGTTGGTCCGCAACCTACTACAATGGAATCCAGAGGACCGTTTAAATATTGACAAATCTTATACAGAGATTAGTTATTTCACCAAAAGTAAAGGTTATGTTGCTGACAATCGAAAATGCTCATGCATCAAATATCAGAAGCTTGATTGA 3315 40.42 MAFQKIELTQLYSFLLWFTVYAITYCSSESSTCLMVYKEGGAPAVFQSPKCPLWKLSDYTFQSPNAPHCQIAMHQGRRKYQEDRTLCALDIRIPFPSKTGIMEVPVGIIAVFDGHNGAEASEMASKILLEYFVVHTYFLLDATYSGIFKRPINSFSNEKEHGTKFDQFIWNVEISNRDRELGRRKYLLPADFVDDYHLEILKEALLRAIQDIDKTFSKEAHKNNLVSGSTATVILLADAQILVANIGDSKTFLCSEKFQSPAEAKATFLRLYKQKRYSGASRARGYGNSKPDSFDGLTHFFAKELTRDHHPDREDERSRVEIAGGHVVDWGGVPRVNGQLAISRAIGDVSFKSYGVISAPEVTDWQPLSTNDSYLVVSSDGIFEKLSSQDVCDLLWEIHNDRMSISEYSPSCSYSLAECIVSTAFERGSMDNMAAIVVPLRSAISSQRFQEGRFVVQRDSSFPISGIEKLIKEHSANSFSSNAVQLEHSHPVMSKFKRLLVEGRHNKLGCFYLSENLDEYKDYVLRTQTDEEEYLCDLPHALPESLNQPYGGSLNVYNDQSLCFHLGAKDQCFHPEGFASFIGLLESIPFHDPGSDYQLFEHPPPILRYVLKKRFGQGSYGEVWLAFHGNCQEAFTPVGENIYDSCNSSFGDANARNGRYSSNSSQAYALEDNVFIMKRVMVERGAGVYLSGLREKYFGEIFFNASTRLEDVLSTGTSNFVFEKSPWGSKDLLVKDESLSYKLGETRQFKNAFPNQFGPKSVMYEEGLNHIVRFVESFESRSNEIWLVFHYEGISLSKLIYSIEDADEEKVEQKNHVQILQPSKWWHWLKTTEAGQEEMKSLIRQLLMALKSCHDRNITHRDIKPENMVICFEDQATGKCLNGSRRGDENFSTKMRIIDFGSAIDEFTVKHLYGSAGPSRVEQTYDYTPPEALLNSSWYQEMSSATLKYDMWSVGVVMLELILGSPNVFQVGDLTRVLLDQHLEGWNEGLKQLAYKLRSFMELCILIPGSPSKSYKKNVHQGGSPASWKCSEEVFAHQIKSRDPLKLGFPNVWALRLVRNLLQWNPEDRLNIDKSYTEISYFTKSKGYVADNRKCSCIKYQKLD 1104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9923939 9949489 + CmaCh02G017820.1 Cma02g01782 289533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01782 1104 Gene3D - 60 447 IPR036457 -
Cma02g01782 1104 Pfam Protein kinase domain 769 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01782 1104 ProSiteProfiles Protein kinase domain profile. 609 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01782 1104 PANTHER PROTEIN PHOSPHATASE 2C 50-RELATED 20 597 - -
Cma02g01782 1104 SUPERFAMILY Protein kinase-like (PK-like) 767 1076 IPR011009 -
Cma02g01782 1104 CDD PP2Cc 75 440 IPR001932 -
Cma02g01782 1104 Gene3D Transferase(Phosphotransferase) domain 1 812 1078 - -
Cma02g01782 1104 SMART PP2C_4 62 438 IPR001932 -
Cma02g01782 1104 PANTHER ALPHABET, ISOFORM E-RELATED 20 597 - -
Cma02g01782 1104 Pfam Protein phosphatase 2C 201 433 IPR001932 -
Cma02g01782 1104 ProSiteProfiles PPM-type phosphatase domain profile. 68 440 IPR001932 -
Cma02g01782 1104 SMART serkin_6 609 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01782 1104 ProSitePatterns Serine/Threonine protein kinases active-site signature. 858 870 IPR008271 GO:0004672|GO:0006468
Cma02g01782 1104 SUPERFAMILY PP2C-like 64 441 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01782 Cma-Chr2:9923939 Cma05g00420 Cma-Chr5:1893659 4.90E-21 dispersed
Cma02g01782 Cma-Chr2:9923939 Cma12g00652 Cma-Chr12:3443551 2.35E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68384 PF00069 Pkinase 5.30E-23 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01782 - - csv:101210198 1849.33