Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g00004 | ATGACGTTGTTGATGTCAATGTCGATGTCGATGAACTTAGTTAGTATTATCGTGTTGGTGGGCGTTAGTGTAACATTTGGAGGCGTAAATGGATTGAGTATGGGATATTACTTGATGAGCTGCCCGTTTGTGGATCCGATTGTGAAGAACACGGTGAATCGAGCTCTTCAAAATGATCCCACTTTGGCTGCATCTCTCGTTCGAATGCATTTTCACGATTGTTTTGTAGAGGGATGCGATGGATCAGTGTTGATTGATTCGACACGAGACAACACAGCAGAAAAGGATTCTCCAGCCAACGAAAGCTTACGAGGTTACGAGGTTATTGATGACATTAAGGAACAATTAGAAAACCAATGTCCTGGTGTTGTTTCTTGCGCCGACATTGTCGCCATGGCTGCCAGAGATGCAGTCTTTTGGGCGGGAGGTCCATTTTATGACATACCGAAGGGAAGGAAGGACGGAACGAGATCCAGAATCGAAGACACCGCCAATTTGCCTTCGCCTTTCTTCAATGCATCTCAGCTTATAAATACCTTCGCCCGCCGTGGCTTTACGGCTCAGCAAATGGTCGCACTTTCGGGGGCGCATACATTAGGAGTGGCACGATGCGTATCATTCAAAGACAGACTGGACGGCACCGACCCTCTTCTGAGTCCCAACTTTGGGAGAACACTATCAAGAACATGCAGCAATGGCGACAATGCAATACAAACATTCGACGCCACGGCTGACAGCTTCGACAACGTCTATTACAACGCGCTGTCGAGAGGAGCCGGGGTTCTGTTTTCGGACCAGACGTTGTTCGCTAGCCCGCGTACTAGGGGCATTGTCAATGCCTACGCCATGAACCAAGCCCTGTTCTTCTTGGACTTCCAACAGGCCATCATCAAAATGGGTATGCTTGATGTAAAGGAAGGTCGTTGGGGCCAAGTCCGCCGCAACTGCCGTAGGGTTAATTGA | 963 | 48.6 | MTLLMSMSMSMNLVSIIVLVGVSVTFGGVNGLSMGYYLMSCPFVDPIVKNTVNRALQNDPTLAASLVRMHFHDCFVEGCDGSVLIDSTRDNTAEKDSPANESLRGYEVIDDIKEQLENQCPGVVSCADIVAMAARDAVFWAGGPFYDIPKGRKDGTRSRIEDTANLPSPFFNASQLINTFARRGFTAQQMVALSGAHTLGVARCVSFKDRLDGTDPLLSPNFGRTLSRTCSNGDNAIQTFDATADSFDNVYYNALSRGAGVLFSDQTLFASPRTRGIVNAYAMNQALFFLDFQQAIIKMGMLDVKEGRWGQVRRNCRRVN | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 113766 | 115718 | + | CmaCh03G000040.1 | Cma03g00004 | 289575 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g00004 | 320 | PANTHER | PEROXIDASE 25-RELATED | 19 | 318 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | ProSiteProfiles | Plant heme peroxidase family profile. | 31 | 320 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | PRINTS | Plant peroxidase signature | 41 | 60 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | PRINTS | Plant peroxidase signature | 65 | 85 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | PRINTS | Plant peroxidase signature | 104 | 117 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | PRINTS | Plant peroxidase signature | 123 | 133 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | PRINTS | Plant peroxidase signature | 142 | 157 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | PRINTS | Plant peroxidase signature | 188 | 200 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | PRINTS | Plant peroxidase signature | 238 | 253 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | PRINTS | Plant peroxidase signature | 254 | 271 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | PRINTS | Plant peroxidase signature | 294 | 307 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | Gene3D | Peroxidase, domain 2 | 167 | 299 | - | - | |
Cma03g00004 | 320 | Gene3D | - | 35 | 320 | - | - | |
Cma03g00004 | 320 | PRINTS | Haem peroxidase superfamily signature | 63 | 77 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | PRINTS | Haem peroxidase superfamily signature | 124 | 141 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | PRINTS | Haem peroxidase superfamily signature | 142 | 154 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | PRINTS | Haem peroxidase superfamily signature | 189 | 204 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | PRINTS | Haem peroxidase superfamily signature | 240 | 255 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | Pfam | Peroxidase | 48 | 283 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | ProSitePatterns | Peroxidases active site signature. | 63 | 74 | IPR019794 | GO:0004601 | |
Cma03g00004 | 320 | SUPERFAMILY | Heme-dependent peroxidases | 31 | 320 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Cma03g00004 | 320 | CDD | secretory_peroxidase | 31 | 319 | IPR033905 | GO:0004601|GO:0042744 | |
Cma03g00004 | 320 | PANTHER | PEROXIDASE 47 | 19 | 318 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00004 | Cma-Chr3:113766 | Cma18g01214 | Cma-Chr18:9599503 | 1.06E-95 | dispersed | |
Cma03g00004 | Cma-Chr3:113766 | Cma12g00394 | Cma-Chr12:2033702 | 7.54E-91 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g00004 | K00430 | - | csv:101202852 | 565.844 |