Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00004 ATGACGTTGTTGATGTCAATGTCGATGTCGATGAACTTAGTTAGTATTATCGTGTTGGTGGGCGTTAGTGTAACATTTGGAGGCGTAAATGGATTGAGTATGGGATATTACTTGATGAGCTGCCCGTTTGTGGATCCGATTGTGAAGAACACGGTGAATCGAGCTCTTCAAAATGATCCCACTTTGGCTGCATCTCTCGTTCGAATGCATTTTCACGATTGTTTTGTAGAGGGATGCGATGGATCAGTGTTGATTGATTCGACACGAGACAACACAGCAGAAAAGGATTCTCCAGCCAACGAAAGCTTACGAGGTTACGAGGTTATTGATGACATTAAGGAACAATTAGAAAACCAATGTCCTGGTGTTGTTTCTTGCGCCGACATTGTCGCCATGGCTGCCAGAGATGCAGTCTTTTGGGCGGGAGGTCCATTTTATGACATACCGAAGGGAAGGAAGGACGGAACGAGATCCAGAATCGAAGACACCGCCAATTTGCCTTCGCCTTTCTTCAATGCATCTCAGCTTATAAATACCTTCGCCCGCCGTGGCTTTACGGCTCAGCAAATGGTCGCACTTTCGGGGGCGCATACATTAGGAGTGGCACGATGCGTATCATTCAAAGACAGACTGGACGGCACCGACCCTCTTCTGAGTCCCAACTTTGGGAGAACACTATCAAGAACATGCAGCAATGGCGACAATGCAATACAAACATTCGACGCCACGGCTGACAGCTTCGACAACGTCTATTACAACGCGCTGTCGAGAGGAGCCGGGGTTCTGTTTTCGGACCAGACGTTGTTCGCTAGCCCGCGTACTAGGGGCATTGTCAATGCCTACGCCATGAACCAAGCCCTGTTCTTCTTGGACTTCCAACAGGCCATCATCAAAATGGGTATGCTTGATGTAAAGGAAGGTCGTTGGGGCCAAGTCCGCCGCAACTGCCGTAGGGTTAATTGA 963 48.6 MTLLMSMSMSMNLVSIIVLVGVSVTFGGVNGLSMGYYLMSCPFVDPIVKNTVNRALQNDPTLAASLVRMHFHDCFVEGCDGSVLIDSTRDNTAEKDSPANESLRGYEVIDDIKEQLENQCPGVVSCADIVAMAARDAVFWAGGPFYDIPKGRKDGTRSRIEDTANLPSPFFNASQLINTFARRGFTAQQMVALSGAHTLGVARCVSFKDRLDGTDPLLSPNFGRTLSRTCSNGDNAIQTFDATADSFDNVYYNALSRGAGVLFSDQTLFASPRTRGIVNAYAMNQALFFLDFQQAIIKMGMLDVKEGRWGQVRRNCRRVN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 113766 115718 + CmaCh03G000040.1 Cma03g00004 289575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00004 320 PANTHER PEROXIDASE 25-RELATED 19 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 ProSiteProfiles Plant heme peroxidase family profile. 31 320 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 Gene3D Peroxidase, domain 2 167 299 - -
Cma03g00004 320 Gene3D - 35 320 - -
Cma03g00004 320 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 Pfam Peroxidase 48 283 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
Cma03g00004 320 SUPERFAMILY Heme-dependent peroxidases 31 320 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma03g00004 320 CDD secretory_peroxidase 31 319 IPR033905 GO:0004601|GO:0042744
Cma03g00004 320 PANTHER PEROXIDASE 47 19 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00004 Cma-Chr3:113766 Cma18g01214 Cma-Chr18:9599503 1.06E-95 dispersed
Cma03g00004 Cma-Chr3:113766 Cma12g00394 Cma-Chr12:2033702 7.54E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00004 K00430 - csv:101202852 565.844