Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00037 ATGTACTCCACGACTGAGAATATGGGAAAGGAAAATTTGCTGCAGAGAGTAGTAGATGACAACACTGAAGTGAATGGTTGTTCAACTGCCGAGAACGAAGATCTCGGTTGTCAGTCTCGCCATAGTGTAGGCAAGGAATCTGGGGCAAGTTGTCGTGTATGTCAATGTAGCGAATCTGACAGGAGAGGTGATGCTGTTTTAGGATTTCTAGGCATCACTCCTCCAATAATGGAAGAAAGAAAAAGTGATCGGGATTCTACATCCGAGAAGCAAAGTCTAAAACATGTTGATGGTTGTTCTATGCTGAAAAAAACCGTTAAAGGGGATTCTGGTTCGATTAAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGTAAAGCTGATATTGAAATGGGTTCATGTCATCTTGAAGATGCATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCTCTTGTACACTATGCATGTGCTCTCAAGTGGTTTGTCAGCCATGGATCAACAGTTTGTGAAATTTGTGGATGTATTGCAGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTAAAAGAATATGAAGCTTTAAGGGAAAGAACTGCTCGTGGGGAACCGAATCCTATGCAGACAATTGCTAGTACCGATATAGATCCCGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTTAGTGAAATTGCATTGTGGTTTAGTCCTCATAGTTATATTAGCAACAATAACTCTAGTGCAGCCTCCCAGGTTGTTTCTGAACATTTGAATACCATCTCAGAAAATGTCGTTCGTGCTGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGCCTGCTCACCGTTACGCTCGCTTGCCTAATAGCTCCTCGGGTGGGGAAGAAAACTGCAAAAAGTGGCCTTCATATTCTTCTCGGAGGAGTTTGTGCGTTAACAGTAGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGAATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTAGTGTTCGGCATTTGGGCGTCGAGGACACACAGTGCCCATACGACGTAA 1110 43.78 MYSTTENMGKENLLQRVVDDNTEVNGCSTAENEDLGCQSRHSVGKESGASCRVCQCSESDRRGDAVLGFLGITPPIMEERKSDRDSTSEKQSLKHVDGCSMLKKTVKGDSGSIKFIGPNGEVFICKADIEMGSCHLEDALVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCIAENIRTDDFRKVVSSLKEYEALRERTARGEPNPMQTIASTDIDPDAVAAVRRQRLSEIALWFSPHSYISNNNSSAASQVVSEHLNTISENVVRAENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 319971 332213 + CmaCh03G000370.1 Cma03g00037 289608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00037 369 SUPERFAMILY RING/U-box 141 176 - -
Cma03g00037 369 ProSiteProfiles Zinc finger RING-CH-type profile. 117 181 IPR011016 GO:0008270
Cma03g00037 369 PANTHER ZINC FINGER, RING-CH-TYPE 30 368 - -
Cma03g00037 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 177 IPR013083 -
Cma03g00037 369 Pfam RING-variant domain 140 174 IPR011016 GO:0008270
Cma03g00037 369 SMART ringv_2 134 175 IPR011016 GO:0008270
Cma03g00037 369 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 30 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00037 Cma-Chr3:319971 Cma07g01264 Cma-Chr7:7013501 0 dispersed
Cma03g00037 Cma-Chr3:319971 Cma14g00100 Cma-Chr14:436891 3.98E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00037 - - csv:101218157 637.491