Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00053 ATGGGAAGAGGCAGAGTTGAGATCAAGAAGATTGAGAATATCAACAGCCGACAAGTTACATTCTCAAAACGCCGAAATGGGTTGATGAAAAAGGCCAAAGAATTGTCGGTTCTTTGTGATGCTGAGGTCGCCATTGTTGTCTTCTCCAGCACTGGAAGACTTTATGAATTCTCCAGTACTAGCATGGAACATACGCTTTCAAGGTACAGAGGACAGGGCATGGAGTTGGATTTTCCAAGAGAGACTTTGGACCATCCAACACAACTGCCACCATCGGATTCTGATGCAAAATCATCCGAAGACGAGTTCGTAAAGCTGAAGTTAACGTACATGCAGATGAGAGGGCAAGAACTGGATAGTTTGAGCTTTAGAGAGCTACAAAACTTGGAATGTCAGTTGCGGGAAGGGATCGTATCGATCAAAGACAAGAAGGAGTCATTGCTTTTGGAGCAGCTCCAAAGGTGTAGGTCACAGGGGGAAGTAGTCATTTCCGAGAACGAGACTCTGCGAAAACAGGCTAGTTTTCGGCTCCTTGAGGAGTTTCAGCAGAGAAATAATACACCACTTTTGGAGTCGAGCCCGCTTCAGAGATCGTACTTTTCGGATTCAAAAACCGCTTCTACCAACGAGACTGAGGCCGAGACCGAGGCCGAGGAAAATGACTGCTCGGAAATTTCCTTGCATCTGGGGTTGTCGTTGGATGGTCGACAAAACAGGAAACGATCGGTTGAAGGCACGAGCAATGACACAGCAGGCAGCTAA 762 46.72 MGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSSTSMEHTLSRYRGQGMELDFPRETLDHPTQLPPSDSDAKSSEDEFVKLKLTYMQMRGQELDSLSFRELQNLECQLREGIVSIKDKKESLLLEQLQRCRSQGEVVISENETLRKQASFRLLEEFQQRNNTPLLESSPLQRSYFSDSKTASTNETEAETEAEENDCSEISLHLGLSLDGRQNRKRSVEGTSNDTAGS 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 480593 485440 + CmaCh03G000530.1 Cma03g00053 289624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00053 253 ProSiteProfiles K-box domain profile. 89 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma03g00053 253 PANTHER MADS BOX PROTEIN 1 235 - -
Cma03g00053 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma03g00053 253 MobiDBLite consensus disorder prediction 187 253 - -
Cma03g00053 253 MobiDBLite consensus disorder prediction 80 99 - -
Cma03g00053 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma03g00053 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma03g00053 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma03g00053 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma03g00053 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma03g00053 253 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Cma03g00053 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma03g00053 253 MobiDBLite consensus disorder prediction 187 210 - -
Cma03g00053 253 Pfam K-box region 101 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma03g00053 253 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 235 - -
Cma03g00053 253 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Cma03g00053 253 SUPERFAMILY SRF-like 2 71 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00242 Cma-Chr1:1103977 Cma03g00053 Cma-Chr3:480593 1.28E-48 dispersed
Cma03g00053 Cma-Chr3:480593 Cma15g01396 Cma-Chr15:8798660 1.35E-38 dispersed
Cma03g00053 Cma-Chr3:480593 Cma01g01466 Cma-Chr1:10310670 4.95E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34581 PF01486 K-box 2.00E-12 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00053 - - cmax:111467266 455.677