Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00068 ATGTCATTTTCTCTGTTCTTTTTCATCTTCCTGTTGATCGATTTCATGTGGGTATCAACTTATCCTCCATTGCTCCTCCAGTTTCTGGGAGCTGTTCTTGATGATGAAATTACCATGTCCGCCATTAGAGAGGAGCTTCAAGTTCTTGAGTGGAGCTCCAACATCTCTGAGTACTGTTCTTGGAAAGGTGTTCATTGTGGTTTGAATCATTCCATGGTTGAAGCTCTTGATCTTTCAGGTCATTCTCTTAGAGGTAATCCAACACTGATTTCTAAGCTCAAAGCTCTGAAATGGCTTGATCTATCCTACAATGACTTCCACGGCGACGTCCCGTCGAGTTTCGCAACCTTATCCGAGCTCGAATTCCTTGATTTTTCTTTGAATAAGTTTGATGGTTCGATCCCGCCCGAGTTTGGTGGTCTCAAGAACCTCAAATCATTGAACCTTTCCAATAATCAGCTGGTGGGAGAAATTCCTAATGAGCTTCAAGGATTAAAGAAGTTGGAGGATTTTCAAGTTTCTAACAATAGGTTGAATGGTTCAATTCCAAGTTGGGTTGGAAATTTGAGCCATCTAAGAGTTTTTACAGCTTATGAGAATGACTTTGTTGGTGTAATTCCTGATAATCTCGGTTCGGTTTCCGAGCTCCATGTGTTGAATCTTCATACCAATAGGCTTGAAGGCTCGATTCCTCGAAGTATTTTCGGTTCGGGGAAGCTTGAGATTTTGGTTCTTACACAAAACAGATTGACCGGCTATCTTCCTGAAGAGATAGGTAACTGTAAAAGCCTTACGAGCGTTCGAATCGGGAACAATGATCTCGTTGGTTCGGTACCTCCAGCCATTGGCAATGTCAGTAGCCTTGCTTACTTTGAAGTTGATAACAATCACCTTTCGGGCGACATTACGTCTTGGATTTCACGGTGCTCTAATCTCACTCTGCTGAATCTAGCCTCGAACGAGTTCACCGGGGTGATTCCTCATGAACTCGGAGAGCTGATGAATCTGCAGGAGCTTATTCTTTCCGGTAATAGCTTGTATGGCGACATTCCTAGATCGATGCTCCGGTGCAAGAATCTCAACAAGCTCGATTTAAGCAGCAATCGATTTAATGGTACTATTCCTTCAGATATCTGTAATATATCAAGATTGCAGTACTTACTTTTGGAACAGAACTCAATAAAAGGAGAGATACCTAAAGAGATTGGAAAATGTACAAAGCTTCTCGACTTACGACTCGGTAGTAACTACCTAACTGGAAGCGTCCCTTCCGAGATCGGTCGTATTAAGAACTTACAGATAGCTTTGAACTTGAGCTTCAATCGTCTAAACGGACCGGTGCCTACAGAGTTGGGGAAACTTGATAAACTGGTTTCTTTAGATTTATCGAACAATCGTCTCTCGGGCGATATCCCGTCTGAGCTTAAGGGCATGTTAAGCTTGATAGACGTGAATTTTTCGAATAATTTACTTACTGGTTCGATTCCTTTCTTTGTTCCATTCCAGAAAACTGCAAGTTCCAGTTTTCTGGGAAACAAAGGCCTTTGCGGGGCTCCATTAAGCGTTACGTGTAAAAATTCGATTGGTTCGTACACTCGAGATTACAATCAAAAGGTCTCGTACAAGATCATACTAGCTGTCATCGGTTCCGGGCTGGCTGTTTTCATATCGGTTAGTATAGTTGTTTTACTTTTTGTGATGAAAGAAAAGCAAGAAAAGGCAGGAAAGTCTTCAAGAGCTGTAGATGATGAAATCATCAAGGATCATCCAACCATAATAGCTGGAAATGTCTTTGACGATAATCTCCGACAGGAGTTAGATCTCGATGCGGTTGTGAAAGCAACGTTTAAGGATTCAAACAAGCTCATATTTGGCACGTTTAGTACTGTTTATAAGGCGGTTGTGCCTTCGGGGATGATCGTATCAGTTAAGAGACTAAAATCGATGGATAAGACGATCATTCATCATCAAAGTAAGATGATCAGAGAGCTCGAAAAGCTTGGCAAACTGAGCCATGCTAATCTTTTGCAACTCATTGGGTATGTAATATACGAAGACGTGGCTCTGTTGCTTCATCGTTACTTACCGAACGGGACATTGGCTCGGCTTCTTCACGAGTCAACGAAACAACCTGAATACGAACCGGATTGGCCCACAAGATTTTCGATCGCCGTTGGCGCAGCCGAAGGGCTAGCTTTCCTTCATCATGTGGCTATAATCCATCTTGATATTTCATCATCCAATATTCTCTTGGATGCAAACTTCAAGCCTTTGGTTGGAGAGGTTGAGATATCAAAACTTTTAGATCCATCAAGAGGCACTGCTAGTATTAGTGCCATTGCAGGTTCATTTGGTTATATTCCACCAGAATATGCGTATACGATGCAAGTTACGGCCCCGGGAAACGTTTATAGCTATGGTGTCGTTTTGCTCGAGATCCTCACGACCAGAATGCCAGTGGATGAGGAGTTTGGTGAAGGAGTAGATTTGGTGAAGTGGGTGCTTAGTGCTCCTTCACGAGGCGAGACACCCGAACAGATACTCGATTCCCGGCTGAGCACGGTGTCGTTCGGGTGGAGGAAGGAGATGCTTGCAGCTCTCAAGATTGCATTGCTCTGTACTGATAGCATACCAGCCAAAAGGCCAAAAATGAAGAAAGTGGTAGAAATGCTTATGGAGATCAAGCAAAATTGA 2694 42.91 MSFSLFFFIFLLIDFMWVSTYPPLLLQFLGAVLDDEITMSAIREELQVLEWSSNISEYCSWKGVHCGLNHSMVEALDLSGHSLRGNPTLISKLKALKWLDLSYNDFHGDVPSSFATLSELEFLDFSLNKFDGSIPPEFGGLKNLKSLNLSNNQLVGEIPNELQGLKKLEDFQVSNNRLNGSIPSWVGNLSHLRVFTAYENDFVGVIPDNLGSVSELHVLNLHTNRLEGSIPRSIFGSGKLEILVLTQNRLTGYLPEEIGNCKSLTSVRIGNNDLVGSVPPAIGNVSSLAYFEVDNNHLSGDITSWISRCSNLTLLNLASNEFTGVIPHELGELMNLQELILSGNSLYGDIPRSMLRCKNLNKLDLSSNRFNGTIPSDICNISRLQYLLLEQNSIKGEIPKEIGKCTKLLDLRLGSNYLTGSVPSEIGRIKNLQIALNLSFNRLNGPVPTELGKLDKLVSLDLSNNRLSGDIPSELKGMLSLIDVNFSNNLLTGSIPFFVPFQKTASSSFLGNKGLCGAPLSVTCKNSIGSYTRDYNQKVSYKIILAVIGSGLAVFISVSIVVLLFVMKEKQEKAGKSSRAVDDEIIKDHPTIIAGNVFDDNLRQELDLDAVVKATFKDSNKLIFGTFSTVYKAVVPSGMIVSVKRLKSMDKTIIHHQSKMIRELEKLGKLSHANLLQLIGYVIYEDVALLLHRYLPNGTLARLLHESTKQPEYEPDWPTRFSIAVGAAEGLAFLHHVAIIHLDISSSNILLDANFKPLVGEVEISKLLDPSRGTASISAIAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRMPVDEEFGEGVDLVKWVLSAPSRGETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLMEIKQN 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 636694 640153 + CmaCh03G000680.1 Cma03g00068 289639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00068 897 Pfam Leucine Rich Repeat 456 477 IPR001611 GO:0005515
Cma03g00068 897 ProSiteProfiles Leucine-rich repeat profile. 143 166 IPR001611 GO:0005515
Cma03g00068 897 Gene3D Transferase(Phosphotransferase) domain 1 695 897 - -
Cma03g00068 897 Gene3D Phosphorylase Kinase; domain 1 586 694 - -
Cma03g00068 897 SUPERFAMILY Protein kinase-like (PK-like) 613 893 IPR011009 -
Cma03g00068 897 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 25 895 - -
Cma03g00068 897 SUPERFAMILY L domain-like 51 351 - -
Cma03g00068 897 Gene3D Ribonuclease Inhibitor 35 182 IPR032675 -
Cma03g00068 897 ProSiteProfiles Protein kinase domain profile. 616 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00068 897 Gene3D Ribonuclease Inhibitor 239 527 IPR032675 -
Cma03g00068 897 ProSitePatterns Tyrosine protein kinases specific active-site signature. 739 751 IPR008266 GO:0004672|GO:0006468
Cma03g00068 897 Pfam Protein kinase domain 618 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00068 897 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Cma03g00068 897 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Cma03g00068 897 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 25 895 - -
Cma03g00068 897 SUPERFAMILY L domain-like 269 521 - -
Cma03g00068 897 SMART LRR_typ_2 381 405 IPR003591 -
Cma03g00068 897 SMART LRR_typ_2 213 237 IPR003591 -
Cma03g00068 897 SMART LRR_typ_2 117 140 IPR003591 -
Cma03g00068 897 SMART LRR_typ_2 141 164 IPR003591 -
Cma03g00068 897 SMART LRR_typ_2 333 357 IPR003591 -
Cma03g00068 897 SMART LRR_typ_2 93 116 IPR003591 -
Cma03g00068 897 SMART LRR_typ_2 165 189 IPR003591 -
Cma03g00068 897 SMART LRR_typ_2 454 477 IPR003591 -
Cma03g00068 897 CDD STKc_IRAK 625 894 - -
Cma03g00068 897 Gene3D Ribonuclease Inhibitor 183 237 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00068 Cma07g01323 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00920 Cma-Chr1:5585414 Cma03g00068 Cma-Chr3:636694 2.59E-60 dispersed
Cma03g00068 Cma-Chr3:636694 Cma08g01039 Cma-Chr8:6510396 2.76E-68 dispersed
Cma03g00068 Cma-Chr3:636694 Cma07g01323 Cma-Chr7:7489953 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68387 PF00069 Pkinase 1.50E-27 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00068 - - csv:101215786 1528.84