Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00071 ATGGCTGAAAGAGGAGGAGACCGAGGCGGCTTCGGCAGAGGATTTGGCGGTAGAGGCCGGGGTGGCGACCGTGGCCGTGGACGACGTCGTGCAGGGCGCCGTGATGAAGAGGAAAAATGGGTTCCAGTCACCAAGCTTGGGCGTCTTGTGAAGGAAGGTAAGATTCAATCACTTGAGCAGATTTACCTTCACTCTCTCCCAATCAAGGAGCACCAGATCGTCGATACTCTCATCGGCCCCAGCCTCAAGGATGAGGTCATGAAGATCATGCCCGTGCAGAAACAGACCCGGGCCGGACAGAGGACTAGGTTTAAGGCCTTCGTTGTCGTTGGCGACGGCAATGGCCATGTCGGATTGGGAGTTAAGTGTAGCAAGGAGGTGGCGACTGCTATTCGTGGCTCGATTATATTGGCTAAGTTGTCGGTGATCCCTGTTAGGAGGGGTTATTGGGGTAACAAGATTGGAAAGCCACATACTGTTCCTTGCAAGGTCACTGGTAAGTGTGGCTCTGTCACTGTACGTATGGTCCCTGCTCCTCGTGGTGCTGGTATTGTCGCTGCACGGGTTCCCAAGAAGGTGCTTCAGTTTGCTGGTATTGATGATGTTTTCACTTCTTCCCGAGGATCGACTAAGACACTTGGAAACTTCGTGAAGGCTACCTTCGATTGTCTATTGAAAACCTATGGTTTCCTCACACCTGAGTTCTGGAAGGAGACTCGTTTCACGAAATCGCCATTCCAAGAGCACACCGATCTGTTGGCAAAACCGACCGTGAAGGCATTGTTGTTGGACGATGCCGAGAGGTTTCTGGCAATTAATCTCGGAATCTCTATCTACTCTTCTTCTCTTCGCTTTTTAATCTCGTGTTTCCCTCCAGAATTTCACGATCTTCTCCCCTCTCTTGTTCATTCCGGTTTCGATTTGGGGATGGGAACCCCGGAATTCCCTAATCTCGGGAAGCATTGCAACTTGGAAGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGCTGTCGCCAGGTCTTTTGTTTGGAGCATCGTAGCTACAAAAGACATAGTTGTCCGAAAACAGATAGACGGGATGTCACCGTTGTCATTTGTCCGCTATGTGCCAAAGGAGTTCGTCTCGTCCCAGATCAAGATCCCAACATTACATGGGAGATACATGTAAACACTGAATGTGACCCATCAAATTATGAAAAAGTCACAAAGAAGAAAAAATGTCCTGTGCCTGGCTGTAGGGAGTCGTTAACGTTTTCAAACACGATCAAGTGTCGGGACTGCTCGGTAGACCATTGTTTGAAACACCGTTTTGGTCTCGACCATAAGTGTCCTGGTCCGAAAAAACCCGAACCAGCAGGCTTTCCATTTGTTGGTGTTTTAAGTAGAAGTAAACAAGAAGAGAATGGGCCTAAGAAAGCATTGCCTACCACAGCTTCCTCTAATTGGACTACAGCCCTCCTTAATGTAGCCTCATCTTTTAAAGCCTCATGGATAGCAACAGGCAACAACAGCAATGGAAATGGACATGTTGAGCAATGTCCACAATGTAGTGCTAAGTTTTCGTTGGTTTTGTCTCTAGTCGAGCATATAAAAAAAGTCCATGAAAGCGGTGCCAATCGACCTGGGGCGAAGAAGGTAGTAATCGATGCTTGTCCAAAGTGTAGCAGAGGGTTCATCGATCCTGTTGCCCTCGTCGAGCATATTGAGAAGGATCATGGTGGTACTTCAAGAGCTTGA 1746 48.22 MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEHTDLLAKPTVKALLLDDAERFLAINLGISIYSSSLRFLISCFPPEFHDLLPSLVHSGFDLGMGTPEFPNLGKHCNLEDCKQIDFLPFTCDCCRQVFCLEHRSYKRHSCPKTDRRDVTVVICPLCAKGVRLVPDQDPNITWEIHVNTECDPSNYEKVTKKKKCPVPGCRESLTFSNTIKCRDCSVDHCLKHRFGLDHKCPGPKKPEPAGFPFVGVLSRSKQEENGPKKALPTTASSNWTTALLNVASSFKASWIATGNNSNGNGHVEQCPQCSAKFSLVLSLVEHIKKVHESGANRPGAKKVVIDACPKCSRGFIDPVALVEHIEKDHGGTSRA 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 646816 652765 - CmaCh03G000710.1 Cma03g00071 289642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00071 581 ProSitePatterns Ribosomal protein S5 signature. 99 131 IPR018192 -
Cma03g00071 581 Gene3D - 145 238 IPR014721 -
Cma03g00071 581 ProSiteProfiles Zinc finger AN1-type profile. 404 454 IPR000058 GO:0008270
Cma03g00071 581 Pfam Ribosomal protein S5, C-terminal domain 166 238 IPR005324 GO:0003735|GO:0005840|GO:0006412
Cma03g00071 581 ProSitePatterns Zinc finger C2H2 type domain signature. 516 537 IPR013087 -
Cma03g00071 581 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 268 - -
Cma03g00071 581 SMART c2h2final6 552 575 IPR013087 -
Cma03g00071 581 SMART c2h2final6 514 537 IPR013087 -
Cma03g00071 581 MobiDBLite consensus disorder prediction 1 37 - -
Cma03g00071 581 Gene3D - 390 456 IPR035896 -
Cma03g00071 581 SUPERFAMILY dsRNA-binding domain-like 78 147 - -
Cma03g00071 581 SMART AN1_Zf_4 322 361 IPR000058 GO:0008270
Cma03g00071 581 SMART AN1_Zf_4 410 451 IPR000058 GO:0008270
Cma03g00071 581 Gene3D - 309 370 IPR035896 -
Cma03g00071 581 ProSiteProfiles Zinc finger AN1-type profile. 316 364 IPR000058 GO:0008270
Cma03g00071 581 ProSiteProfiles S5 double stranded RNA-binding domain profile. 82 145 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cma03g00071 581 PANTHER RIBOSOMAL S SUBUNIT 1 268 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cma03g00071 581 TIGRFAM uS5_euk_arch: ribosomal protein uS5 35 242 IPR005711 GO:0003735|GO:0006412|GO:0015935
Cma03g00071 581 SUPERFAMILY AN1-like Zinc finger 402 453 IPR035896 -
Cma03g00071 581 ProSitePatterns Zinc finger C2H2 type domain signature. 554 575 IPR013087 -
Cma03g00071 581 SUPERFAMILY Ribosomal protein S5 domain 2-like 158 238 IPR020568 -
Cma03g00071 581 Gene3D Classic Zinc Finger 515 581 - -
Cma03g00071 581 Gene3D - 39 144 - -
Cma03g00071 581 Pfam AN1-like Zinc finger 410 450 IPR000058 GO:0008270
Cma03g00071 581 Pfam AN1-like Zinc finger 322 359 IPR000058 GO:0008270
Cma03g00071 581 Pfam Ribosomal protein S5, N-terminal domain 82 146 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cma03g00071 581 SUPERFAMILY AN1-like Zinc finger 296 359 IPR035896 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00071 Cma-Chr3:646816 Cma14g00478 Cma-Chr14:2335898 2.08E-151 dispersed
Cma06g00050 Cma-Chr6:270433 Cma03g00071 Cma-Chr3:646816 3.64E-17 transposed
Cma14g00628 Cma-Chr14:3110075 Cma03g00071 Cma-Chr3:646816 1.51E-34 transposed
Cma03g00071 Cma-Chr3:646816 Cma07g01320 Cma-Chr7:7477968 1.13E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34583 PF03719 Ribosomal_S5_C 3.20E-23 CL0329 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00071 K02981 - cpep:111803780 497.664