Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00072 ATGGAGGTCGATCCAAATTCTGGGAAATCGTCGAAACAGATTGGGGGCGGCCAGGTTTGTCAGATCTGCAGCGATTCCGTCGGCACGACGGCTGACGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCGTTTCCGGTTTGCCGTCCCTGTTACGAGTACGAGAGGAAAGACGGGAATCAGTCTTGCCCTCAATGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTCCGGTTCATGGAGAGGCAGTGGAAGATGGTGATGGTAATGGAACGGAAGGGGCGCAAGAAAGGCATCATAAGAAGCCAGAGCGCACGCTTAGCTGGGATACCAATTATGATAAGGAAGGATCGTTTAATCACATTCCTTTGCTCACCACTGGACGATCTGTTTCTGGAGAACTGTCTGCTGCATCTCCAGAGAGGCTCTCCATGGCATCGCCTGAAAGTGGGAGTCGCGCTAACTATAGAATCATGGATCAATCGAGAGACTCGGGATCGGCTAGGTTTGGCAATGTAGCTTGGAAAGAGAGGATAGATAGTTGGAAGGTGAAGCAGGACAAGAGTGTGCCGCCGATGAGTGTTAGTCATGCTCCTTCGGAAGGGAGGGGTGGTGCTGATTTTGATGCTAGCACTGATGTCATGATCGATGATTCTTTACTGAATGACGAAGCTCGTCAGCCTCTATCGAGGAAGGTTTCTATTCCGTCCTCTAGGATTAACCCTTATAGGATGGTCATAGTTCTGCGGCTTATTATTCTTTGCATCTTCTTGCACTACCGAATTACAAATCCAGTTCCGAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATATGGTTTGCTGTATCTTGGATTTTGGATCAGTTCCCCAAATGGCTTCCGGTCAACCGGGAGACATATCTTGATAGGCTTGCTCTACGATATGATCGTGAAGGAGAGCCGTCTCAGTTGGCTGCTGTCGACATATTTGTCAGTACTGTCGACCCTCTGAAAGAACCTCCCCTTGTCACAGCCAATACGGTCCTATCGATTCTCTCTGTGGACTATCCAGTCGATAAAGTTTCTTGCTATGTATCAGATGACGGAGCTGCTATGTTAACATTTGAAGCTTTGTCCGAAACATCAGAATTTGCAAGAAAATGGGTTCCCTTCTCCAAGAAGTACAGCATTGAGCCACGAGCACCCGAATGGTATTTTTCTCAAAAGATCGATTACTTAAAGGACAAGGTTCATCCATCATTCGTGAAGGATCGGAGGGCGATGAAGAGAGAATACGAGGAGTTCAAAATTCGTATCAATGGACTCGTTGCTAAGGCACAGAAAGTTCCTGATGAAGGGTGGGTCATGCAAGACGGTACGCCATGGCCGGGAAATAACACTAGAGATCATCCAGGAATGATACAGGTTTTCTTAGGCCACAGTGGAGGACTCGATACTGAGGGTAACGAGCTCCCACGTCTGGTTTATGTTTCTCGTGAGAAGCGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCTCTTGTTCGGGTATCTGCCGTGCTTACCAATGGACCCTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCGTTGCGGGAAGCTATGTGTTTTATGATGGATCCTAACCTTGGAAAATCAGTTTGCTACGTTCAGTTTCCACAGAGGTTTGATGGGATTGATAGAAATGATCGATATGCTAACCGAAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGACGGTATTCAAGGTCCAGTTTATGTGGGAACGGGATGTGTTTTCAATCGAACTGCGTTGTATGGCTATGAGCCCCCTCTCAAGCCCAAGCATAAAAAACCAGGGCTATTCTCGAGTTGCTTTGGGAAGTCGAAAAAGAAAAGTTCTAAATCAAAAAGAAAAGATTCTGATAAGAAGCAAACGAGTAAAAATGTCGATCCCACTGTGCCAATATTCAACCTCGAGGATATTGAGGAAGGAGTTGAAGGTGCCGGGTTTGATGACGAGAAATCGCTGCTAATGTCGCAAATGAGCCTGGAGAAGAGGTTCGGTCAATCGGCTGTATTTGTTGCTTCCACGCTAATGGAGAACGGTGGCGTGCCGCAGTCTGCCACTCCGGAATCTCTCCTTAAAGAAGCAATTCATGTCATCAGTTGTGGATACGAGGATAAAACAGACTGGGGAAGTGAAATCGGATGGATCTACGGTTCGGTCACAGAAGATATTTTGACAGGGTTCAAGATGCACGCCCGTGGTTGGAGATCGATCTATTGCATACCGGACCGTCCTGCATTTAAAGGGTCTGCTCCCATTAATCTTTCTGATCGTCTTAACCAAGTGCTTCGGTGGGCGTTAGGTTCGGTTGAAATTCTCTTCAGTCGGCATTGTCCTATGTGGTACGGTTATGGTGGACGGTTGAAATGGCTCGAGCGATTTGCTTATGTTAACACTACCATTTACCCAATAACATCGATTCCTCTTCTTGCCTATTGTACCTTACCTGCAATATGTCTGCTCACTGGAAAGTTCATCATTCCTCAGATCAGTAATCTTGCCAGCATCTGGTTCATTTCGCTCTTTCTTTCCATCTTTGCTACTGGTATTCTGGAAATGAGATGGAGCGGTGTCGGGATCGATGAATGGTGGAGAAACGAGCAGTTCTGGGTTATCGGAGGTGTGTCGGCCCATCTGTTTGCTGTGTTCCAAGGTCTTCTTAAAGTTCTTGCTGGGATTGATACCAACTTCACGGTTACTTCAAAAGCATCTGATGAAGATGGAGATTTTGCTGAGCTCTACTTGTTCAAGTGGACAACTCTTCTCATTCCCCCAACTACTCTCCTTATTATCAACATAGTAGGAGTTGTTGCTGGAATTTCTTATGCCATTAACAGTGGCTATCAATCTTGGGGTCCCCTTTTCGGCAAACTGTTCTTCGCGTTCTGGGTGATTATTCATCTCTATCCCTTCCTCAAGGGTCTGATGGGTCGCCAGAACCGAACTCCCACGATCGTGGTTGTCTGGTCCATCCTCCTTGCCTCAATCTTCTCCCTTTTATGGGTTCGGATCGATCCCTTCACAACTCGGGTAACTGGTCCTGACGTTGAACAATGTGGAATCAACTGCTAA 3153 46.34 MEVDPNSGKSSKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVHGEAVEDGDGNGTEGAQERHHKKPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVMIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPVPNAFALWLISVICEIWFAVSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFSKKYSIEPRAPEWYFSQKIDYLKDKVHPSFVKDRRAMKREYEEFKIRINGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLFSSCFGKSKKKSSKSKRKDSDKKQTSKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 655840 661747 - CmaCh03G000720.1 Cma03g00072 289643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00072 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 93 IPR013083 -
Cma03g00072 1050 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Cma03g00072 1050 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 440 613 IPR029044 -
Cma03g00072 1050 Pfam Cellulose synthase 322 1043 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cma03g00072 1050 MobiDBLite consensus disorder prediction 90 110 - -
Cma03g00072 1050 PANTHER CELLULOSE SYNTHASE 16 1050 - -
Cma03g00072 1050 CDD mRING-HC-C4C4_CesA_plant 18 68 - -
Cma03g00072 1050 MobiDBLite consensus disorder prediction 623 655 - -
Cma03g00072 1050 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 853 IPR029044 -
Cma03g00072 1050 Pfam Zinc-binding RING-finger 16 86 IPR027934 -
Cma03g00072 1050 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 16 1050 - -
Cma03g00072 1050 MobiDBLite consensus disorder prediction 73 111 - -
Cma03g00072 1050 SUPERFAMILY RING/U-box 9 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00072 Cma-Chr3:655840 Cma08g00528 Cma-Chr8:3045951 0 dispersed
Cma06g01393 Cma-Chr6:9025320 Cma03g00072 Cma-Chr3:655840 2.09E-157 transposed
Cma03g00072 Cma-Chr3:655840 Cma07g01319 Cma-Chr7:7466028 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00072 K10999 - csv:101211779 2091.23