Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00081 ATGCCCCCATTCCCCTCCTCCTTCCCACTTATCTTCTTCTTCTTCTTCTCCTTGACCCTTTCTTTTACTTCTTCTCTCAACTCCGACGGCCTCTCCCTCCTCGCCCTCAAAGCCGCCATTGAAACCGACCCATCTCACGTCCTCGAGTCCTGGTCCGAGTTCGACTCCACCCCATGTCACTGGCCGGGAATCGTCTGCACTCGCGACCGTGTCACTCAGCTCTCCCTCCCCAACAAAGCCCTCACCGGCTACATCCCATCTGAAATCGGCCTTCTCGATTCCCTCCGCCGCCTCTCTCTCGCATTCAACAATTTCTCTAAGCCGATCCCTTCTCATCTCTTCAACGCCACGAATCTTGTCGTTCTTGACCTTTCCCACAACTCCCTCTCCGGTTCGCTTTCCGATCAAATCGGTGACCTGAGGAAGCTTCGCCATCTCGATTTGTCCTCTAATTTCCTCAATGGCTCTCTCCCCAATCGCCTCACCGAGTTAACAGAACTCGTCGGAACTCTCAATTTGTCCTACAATCAATTCTCCGGCGAGGTTCCGTCATCGTTTGGTAACCTCCCTTTGATTGTGAACCTCGATGTCCGTCACAATAATCTCACCGGGAAAATCCCTCAGGTGGGTTCGCTTTTGAATCAAGGTCCGACGGCGTTTTCCGACAACCCGAGTCTATGTGGGTTTCCGTTACAGACGCCATGTCCAGAAGCTCAGAACCCGAATGTTTTCCCCGAGAATCCACAGAATCCCAAGTCTGTAAACGGGAACTTCCCGGGGTACGGCGGCGGGAGAGAGAATGCCGGAGGTGGTGTCGCTGGGTCGGGTATGGTGGCGGTGGTGTCGTCGATATTCGCGGTGGTGGGGGTGGTGTCGCTGACGGTGTGGTGGTTCCGGAGGAAAGGTGTAGAGGGTAGGGCAGAGGAGGGCAAATCGGGAAAGGGGAGTCCGGAGAGGGAGAGTTTGGGGGAGTCGGAAGGGCAAGATGGTAAATTCGTAGTGATGGATGAAGGGATGAATTTGGAATTAGAGGATTTGTTGAGGGCATCGGCTTACGTGGTGGGGAAGAGTAGGAGTGGGATAGTGTACAAGGTAGTGGCGGGGCGAGGATCTAGTGCGGGCGCGAGTATTGTAGCTGTAAGGAGACTTAACGATGGTGATGCCACGTTGACGTTAAAGGATTTCGAATATGAGATCGAGTCCATTGGTAGGGTCCAGCATCCCAACATCGTACGGTTGAGAGCCTATTACTATGCAGCTGATGAGAAACTCCTCGTCACTGATTTCATCAAGAATGGGAGCTTGCACACCGCGCTACATGGAAGTCTGTCGAGTTCTTTGTCACCTCTGCCATGGTCTGCAAGGTTAAAAATTGCTCAAGGAGCTGCAAGGGGTTTGGCCCACATTCATGAATTCGGTGCTCGAAAATACGTACATGGAAACATAAAATCTACAAAAATCCTTCTCGACGACGATTTCGAGCCTTACATTTCAGGTTTTGGACTTGGTCGTCTCGGCCAAGGAGCACCTAAGTTCACTCCAACCTCCTCCAAGAAGTTGAGCTCAAACCAGAACATGATAAGCTCAATCATGGGGTCAAGCATTTCGAGTCCCTCGGCTATGTACTTGGCGCCAGAGGTTCGGGAGTTTGGAGGGAAGTACACGCAGAAATGCGACGTGTACTCGTTCGGGATCGTGATTCTTGAACTTTTGAGCGGTAGATTGGCCGATGTCGTATCGGAAAATGATGGGAAGGGGTTGGAATGTTTCGTGAGAAAGGCGTTTCAAGAAGAGCGGCCATTGACTGATGTTATCGACCCTACACTTGTGCCTGAGATTTATGCTAAGAAACAAGTCGTTTCGACGTTTCATATTGCACTGAATTGCACCGAGCTTGATCCCGAGCTGCGTCCGAGAATGAGAATGGTGTCGGAGTGTCTCGATCGAATTAAATCTCAGTGA 1962 51.53 MPPFPSSFPLIFFFFFSLTLSFTSSLNSDGLSLLALKAAIETDPSHVLESWSEFDSTPCHWPGIVCTRDRVTQLSLPNKALTGYIPSEIGLLDSLRRLSLAFNNFSKPIPSHLFNATNLVVLDLSHNSLSGSLSDQIGDLRKLRHLDLSSNFLNGSLPNRLTELTELVGTLNLSYNQFSGEVPSSFGNLPLIVNLDVRHNNLTGKIPQVGSLLNQGPTAFSDNPSLCGFPLQTPCPEAQNPNVFPENPQNPKSVNGNFPGYGGGRENAGGGVAGSGMVAVVSSIFAVVGVVSLTVWWFRRKGVEGRAEEGKSGKGSPERESLGESEGQDGKFVVMDEGMNLELEDLLRASAYVVGKSRSGIVYKVVAGRGSSAGASIVAVRRLNDGDATLTLKDFEYEIESIGRVQHPNIVRLRAYYYAADEKLLVTDFIKNGSLHTALHGSLSSSLSPLPWSARLKIAQGAARGLAHIHEFGARKYVHGNIKSTKILLDDDFEPYISGFGLGRLGQGAPKFTPTSSKKLSSNQNMISSIMGSSISSPSAMYLAPEVREFGGKYTQKCDVYSFGIVILELLSGRLADVVSENDGKGLECFVRKAFQEERPLTDVIDPTLVPEIYAKKQVVSTFHIALNCTELDPELRPRMRMVSECLDRIKSQ 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 799037 804121 - CmaCh03G000810.1 Cma03g00081 289652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00081 653 Pfam Leucine rich repeat 94 151 IPR001611 GO:0005515
Cma03g00081 653 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 653 - -
Cma03g00081 653 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 12 653 - -
Cma03g00081 653 Gene3D Ribonuclease Inhibitor 26 168 IPR032675 -
Cma03g00081 653 Gene3D Ribonuclease Inhibitor 169 237 IPR032675 -
Cma03g00081 653 Pfam Protein tyrosine and serine/threonine kinase 354 646 IPR001245 GO:0004672|GO:0006468
Cma03g00081 653 SUPERFAMILY L domain-like 28 232 - -
Cma03g00081 653 MobiDBLite consensus disorder prediction 306 326 - -
Cma03g00081 653 Gene3D Transferase(Phosphotransferase) domain 1 430 653 - -
Cma03g00081 653 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cma03g00081 653 MobiDBLite consensus disorder prediction 306 329 - -
Cma03g00081 653 PRINTS Leucine-rich repeat signature 119 132 - -
Cma03g00081 653 PRINTS Leucine-rich repeat signature 140 153 - -
Cma03g00081 653 ProSiteProfiles Protein kinase domain profile. 348 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00081 653 Gene3D Phosphorylase Kinase; domain 1 324 429 - -
Cma03g00081 653 SUPERFAMILY Protein kinase-like (PK-like) 353 647 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00081 Cma-Chr3:799037 Cma04g01825 Cma-Chr4:9208413 4.51E-175 dispersed
Cma03g00081 Cma-Chr3:799037 Cma07g01308 Cma-Chr7:7405894 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68389 PF07714 PK_Tyr_Ser-Thr 3.40E-23 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00081 - - cmax:111467172 1170.22