Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00085 ATGGCTTCCCTCTTGAAACCGCCATTGTTGCTCTCATTAGTCTTTTCTTTCTTCATTTTGTGTTCTTCATCCTCTGAGGAATCGACCCTTTTGACCTTCAAAGCTTCCATGAACGATTCAACGAACTCTCTCTCGAATTGGGTTTCTTCTTCTCCAACCCATTTCTGTAATTGGACTGGAATTTCTTGTACGAGTGCTTCTCCTTCATCGCTTTCGATTTCCGCCATTGTTCTTCAGGGTTTGAACCTTTCCGGTGAAATTTCATCTTCCATTTGCGAACTCCCTCGTTTAACCCATCTTAATCTCGCTGATAATCGCTTCAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCAGCGCGTTGGAGAGTTTGAATCTGAGTAATAATCTCATTTGGGGTACAATCCCAGATCAGATTTCTCTGTTTGATTCTCTACGAGTTCTTGATTTTGCGAGGAATCACATCGAAGGGAAGATCCCTGAAGGCATTGGGGCTTTGAAGAATCTTCAAATTCTTAATCTGAGGAACAACTTGATTTCTGGTAGAGTACCCTCTGTTATCTTTCATAATCTTACTGAACTTGTTGTTCTTGATTTGTCTGAAAATGCTTATCTGATGAGTGATATTCCTAATGAGATTGGTAAGCTTGAGAAGCTTGAGGAGCTATGGCTTCAAAGCTCTGGTTTCTATGGCGAAATCCCTTATTCTTTCTTGGGTTTGAAGAGTTTGAATGTTTTGGATCTTTCTCAGAATAATCTCACTGGAAAACTCCCTGAAATGATGGGTTCTTTTTTGAAGAATTTGGTGTTCTTTGATGTTTCTGAGAATAAACTCATGGGGGCTTTCCCAAATGGGGTTTGTAGTGGAGAATCCCTTGTGAGTTTTAGTGTTCATACCAATTTTTTCACTGGGAGTTTGCCTAATTCCTTGAATAAATGCTTGAATCTTGAGAGGTTTCAAGTTCAGAACAATGGGTTTTCAGGGGATTTCCCTGAATCCTTATGGTCATTGCCTAAGATTAAGCTAATTAGAGCTGAAAACAATGGTTTCTCTGGTGAAGTTCCTGAGTTCATATCAATGGCTACTCATCTTGAGCAAGTTCAGCTTGATAACAACAGTTTTTCGAGTAAGATACCCCAAGGTCTTGGATCGATTCGAAGCTTATATCGATTCTCTGCCTCGCTTAATCGTTTTCATGGTGATCTGCCACCAAACTTCTGTGATTCTCCATTGATGAGTATTATTAATCTGTCTCATAATTCACTTTCGGGTCGAATTCCCGAGCCGAAGAACTGCAAGAAACTTGTCTCATTGTCCTTAGCAGGCAATAGTTTTAGTGGAGAAATTCCTAGTTCCCTTGCAGATCTACCTGTATTGACTTATCTTGATCTTTCTGATAACAATCTCACTGGCTCGATCCCTCAACGACTCGAAAACTTAAAGTTTGCACTGTTTAATGTTTCGTTTAATCAACTATCGGGCGCTGTTCCGTTTTCTTTGATTTCTGGATTGCCAGCTTCTTTTCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCTTGTTCACAAGGCCATCCAGTAAATGATATGTCTGGACTTAACAAAATGACATGTGCCCTTGTCTCTATAGCTTGTGTTCTTGGAGTTATGAGCTTAGCTGCTGGGTTTGTTCTGTATTACCGGTCGTTCAAATCGAAATCCCGTGTCGATAACTGGCATTCGGTCTACTTCTACCCTCTTAGAATCAGTGAGCACGCGTTGATCATGGGGATGAATGAGAAAACTGCACAAGGATGTGAGGGAGCTTTTGGCCAAGTGTTCGTTTTAAGCTTACCGAGCCGTGAACTGATTGCCGTGAAGAAACTTGTTAAGTTCGGGAGTCGTTCGTGGAAGTCGTTGAAAGCCGAGGTCAAGACGTTGGCTAAGATCAGGCATAAGAACATCATCAAAATTCTGGGGTTTTGTCATTCTGATGATGCCATTTTTTTGATCTATGAATTCTTACATAAAGGAAGCTTGGCTGACTTGTTATGCAGAAATGATTCTTGTTTGAATTGGAATGTGAGACTAAGAATTGCTATTGAGGTTGCTCAAGGACTTGCTTACATTCACAAGGACTACGTTCCACGTTTGCTTCATCGAAACATCAAATCGTCGAACATTCTACTGGACGTTGACTTGGTCCCGAAGCTCACAGATTTTGCTCTCGACCATATCGTTGGAGAGTCGGCGTTTCACTCGACAGCAACAGAGCAAATGGATGTGTACAGCTTTGGAGTAGTGTTGCTAGAACTGGTGACTGGAAGACTAGCCGAGCGTTCAGAATCGACGGATGCTCTCGACGTGATCCAGTGGGTGAGGAGGAAGGTGAACATAGCGAATGGTGCTTCCCAAGTCCTTGACCCGAGCATATTGGAGCATTCTCAACGAGGGTCAATGCTGGAAGCTCTAGACGTTGCCCTCCAATGCACTTCTATGATGCCTGATAAACGACTGTCGATGCTGGAAGTTGCCAAGGCGCTTCAACTGATCGGTTCGACAACGAACCTTGATGATGCTGCTGCCTTCTCGGCTGCAGAGGATGATAGTTCGATTCACAATCCCAATCAATCTACGACGCGGCTTCCACAAGAAGACGAAGAAGAAGAAGAGGAAGGAGGAGGAGGAGGAGGAGGAGAAGTTTTTTGTTGTTTCCTTTGCCTCAAGGAAAAATGGAGGTGGTATACTGTTGGAAACGCATCTTTAATTTTCAATTTCTTACTCGAATTTCACGGCTTAAGGATGAAGAATTATGAATCTCCGAATGTGGATCTTCCGACGACGGAGAAAGAAATCGTACCGGAGAAGATTGAGGATGAAGAGATCAAAGATCCTTTGTGTCATTGTGATCTTTGCGATGCGGAACTTGTGCACAAACTTGCTCAACTTCTTCTTCCTGGATTATCCACCGCATGCGTCGATAATACGACTGGAGGTATCTTTCGAACCCCTGGCTCCGTGGCTGCCGATATGAGGAAAGAAATGGTAGATTATTTAACCTTGAGGAGCGAAACTTTTGTTGCGGAATCTGTAATCTTAGAGAATGCTCCGGATGCGGAGTTATCCGATCATCCTTACGATATCATCTCTGATTTTGTTGAAGATTTTTCTCTGTCGAAGAGAAATTTTTTTAGTAGAGTTTCAGCCTGGGTTCTAAGTGAGAAACGAGAGGACAAAATAGACGATTTTGTTCAGGAAATGGATGTCAATGGCTTTTGGCCGCTTGACAGGAGACAAGCAATTGCTCAGGCTTTGCTTAAGAACGTAGATTTCAAGAGTGAGTATCATTGTGACAAGAAATTCCACTCTGCAGAAGAATTAGCTGAGCATGTTGAAATCTGTGGGTTTAGAACCTTAACTTGCACAAATGAAGGCTGCACTGCACTATTTTGTGCAAACCACACAGAACAGCATGATTCCATTTGCCCTTTCAAGATAATTCAATGTGAACAGAAGTGTTCTGCCTTTATTATGAGACGTGAAATGGACCGCCATTGCATAACTGTTTGTCCAATGAAGCTTGTGAATTGCCCCTTCCATAATATGGGTTGCCAATTCCCTGTTCCTTACTCTTTGATAGCGCAGCATTGTACAGAGAGTTTTGATTCTCATTTGCTGCACATTCTTCACTCTATTCACAAGGAAGCCAATGAAGAGACTCTTAAACATCGACGGCAACAGCTTGAAGAGGCATCATCACTTGACCACCTTAGAGGGCTTCAAAACTTGAGATTGTTAACCAAGAAAATCAAAGAAATGGAATCTGAGCTAGGACCATTGGTAATCATCTCCGAGGTTGAGGAAACAGAAGAAGCGAAGGACGCGTCTAACGAAACTGAAGAAGGGAAGGAGACATCTAATGCAACTGAAGAAGCAAAGGATGCCTCTAATGCAACCGAAGAAAAGAAAGACGTGTCGAATGGAACTGAAGAAACAAAGGATGCATCTATTGCAGCTGAAGAAACAAAGGATGCATCTATTGCAGCTGAAGAAACGAAGGATGCGTCTACTGCAATTCAAGAAAGCGAAGTCGTGTCTGCGGCAATCAAAGAAACAAAGGGCACTTTAGATGAAGGGGAAGAAGCCAATGATGCTGAAAAAGAAGAAACAAAGGATGCCATTATTGCTACTGAAGAAGGGAATGCTGTGCCTACTGCAATTCATGAAAGGGATGTCATGTCGAGCGCAATTGAAGAAACGAAGGACGTTTCGCCTATGGCAACAGAAGAACCGAATGACGCTTCTAATGAAAAAGAAGAAGCCAATGACACTTCAAACGAAAAAGAGGAAACGGAAGATGCATCGACTGTAATTGAAGAAACAAAGGATGGTTCTGATTCGATCGAAACGAAGAATGCTTCTGATGCAGCAGAGGAAGAGACAAAGGACGCTTCGAACGCAAAGGAGGAGGGAGAAGAAGCGAAGAAGGAAACTGAAGAAAGCAAGGAGGGCGACAATGGAAGTGAAGAAAGGAAAGGTCCATCTAAAGGAATGGAAGAAAGAAAGGATGATCCAGATGAAGCTGAGAGATAA 4581 42.61 MASLLKPPLLLSLVFSFFILCSSSSEESTLLTFKASMNDSTNSLSNWVSSSPTHFCNWTGISCTSASPSSLSISAIVLQGLNLSGEISSSICELPRLTHLNLADNRFNQPIPLHLSQCSALESLNLSNNLIWGTIPDQISLFDSLRVLDFARNHIEGKIPEGIGALKNLQILNLRNNLISGRVPSVIFHNLTELVVLDLSENAYLMSDIPNEIGKLEKLEELWLQSSGFYGEIPYSFLGLKSLNVLDLSQNNLTGKLPEMMGSFLKNLVFFDVSENKLMGAFPNGVCSGESLVSFSVHTNFFTGSLPNSLNKCLNLERFQVQNNGFSGDFPESLWSLPKIKLIRAENNGFSGEVPEFISMATHLEQVQLDNNSFSSKIPQGLGSIRSLYRFSASLNRFHGDLPPNFCDSPLMSIINLSHNSLSGRIPEPKNCKKLVSLSLAGNSFSGEIPSSLADLPVLTYLDLSDNNLTGSIPQRLENLKFALFNVSFNQLSGAVPFSLISGLPASFLQGNPDLCGPGLQTPCSQGHPVNDMSGLNKMTCALVSIACVLGVMSLAAGFVLYYRSFKSKSRVDNWHSVYFYPLRISEHALIMGMNEKTAQGCEGAFGQVFVLSLPSRELIAVKKLVKFGSRSWKSLKAEVKTLAKIRHKNIIKILGFCHSDDAIFLIYEFLHKGSLADLLCRNDSCLNWNVRLRIAIEVAQGLAYIHKDYVPRLLHRNIKSSNILLDVDLVPKLTDFALDHIVGESAFHSTATEQMDVYSFGVVLLELVTGRLAERSESTDALDVIQWVRRKVNIANGASQVLDPSILEHSQRGSMLEALDVALQCTSMMPDKRLSMLEVAKALQLIGSTTNLDDAAAFSAAEDDSSIHNPNQSTTRLPQEDEEEEEEGGGGGGGEVFCCFLCLKEKWRWYTVGNASLIFNFLLEFHGLRMKNYESPNVDLPTTEKEIVPEKIEDEEIKDPLCHCDLCDAELVHKLAQLLLPGLSTACVDNTTGGIFRTPGSVAADMRKEMVDYLTLRSETFVAESVILENAPDAELSDHPYDIISDFVEDFSLSKRNFFSRVSAWVLSEKREDKIDDFVQEMDVNGFWPLDRRQAIAQALLKNVDFKSEYHCDKKFHSAEELAEHVEICGFRTLTCTNEGCTALFCANHTEQHDSICPFKIIQCEQKCSAFIMRREMDRHCITVCPMKLVNCPFHNMGCQFPVPYSLIAQHCTESFDSHLLHILHSIHKEANEETLKHRRQQLEEASSLDHLRGLQNLRLLTKKIKEMESELGPLVIISEVEETEEAKDASNETEEGKETSNATEEAKDASNATEEKKDVSNGTEETKDASIAAEETKDASIAAEETKDASTAIQESEVVSAAIKETKGTLDEGEEANDAEKEETKDAIIATEEGNAVPTAIHERDVMSSAIEETKDVSPMATEEPNDASNEKEEANDTSNEKEETEDASTVIEETKDGSDSIETKNASDAAEEETKDASNAKEEGEEAKKETEESKEGDNGSEERKGPSKGMEERKDDPDEAER 1526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 854555 862979 - CmaCh03G000850.1 Cma03g00085 289656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00085 1526 Gene3D Ribonuclease Inhibitor 25 142 IPR032675 -
Cma03g00085 1526 MobiDBLite consensus disorder prediction 1369 1391 - -
Cma03g00085 1526 Coils Coil 1365 1385 - -
Cma03g00085 1526 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Cma03g00085 1526 Gene3D Ribonuclease Inhibitor 157 262 IPR032675 -
Cma03g00085 1526 Coils Coil 1466 1493 - -
Cma03g00085 1526 MobiDBLite consensus disorder prediction 1284 1526 - -
Cma03g00085 1526 Gene3D Ribonuclease Inhibitor 263 527 IPR032675 -
Cma03g00085 1526 ProSiteProfiles Protein kinase domain profile. 595 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00085 1526 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 854 - -
Cma03g00085 1526 Coils Coil 1430 1450 - -
Cma03g00085 1526 MobiDBLite consensus disorder prediction 861 892 - -
Cma03g00085 1526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1153 1218 IPR013083 -
Cma03g00085 1526 SUPERFAMILY Protein kinase-like (PK-like) 603 852 IPR011009 -
Cma03g00085 1526 PANTHER OSJNBB0022F23.6 PROTEIN 8 854 - -
Cma03g00085 1526 SUPERFAMILY L domain-like 206 516 - -
Cma03g00085 1526 MobiDBLite consensus disorder prediction 1428 1521 - -
Cma03g00085 1526 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Cma03g00085 1526 Pfam Protein kinase domain 603 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00085 1526 Pfam TRAF-type zinc finger 1154 1212 IPR001293 GO:0008270
Cma03g00085 1526 SMART LRR_typ_2 166 190 IPR003591 -
Cma03g00085 1526 SMART LRR_typ_2 240 264 IPR003591 -
Cma03g00085 1526 SMART LRR_typ_2 456 480 IPR003591 -
Cma03g00085 1526 SMART LRR_typ_2 94 118 IPR003591 -
Cma03g00085 1526 SMART LRR_typ_2 191 216 IPR003591 -
Cma03g00085 1526 SMART LRR_typ_2 265 289 IPR003591 -
Cma03g00085 1526 Gene3D Transferase(Phosphotransferase) domain 1 672 866 - -
Cma03g00085 1526 SUPERFAMILY L domain-like 24 304 - -
Cma03g00085 1526 MobiDBLite consensus disorder prediction 1284 1346 - -
Cma03g00085 1526 ProSiteProfiles Zinc finger TRAF-type profile. 1154 1205 IPR001293 GO:0008270
Cma03g00085 1526 ProSiteProfiles Leucine-rich repeat profile. 458 481 IPR001611 GO:0005515
Cma03g00085 1526 Gene3D Phosphorylase Kinase; domain 1 602 671 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00085 Cma07g01299 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00085 Cma-Chr3:854555 Cma16g00736 Cma-Chr16:3881525 4.65E-131 dispersed
Cma03g00085 Cma-Chr3:854555 Cma07g01299 Cma-Chr7:7366377 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68390 PF00069 Pkinase 1.30E-28 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00085 - - csv:101222175 1421.76