Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00093 ATGTCTAACCCATGTTCCAACTCATTAGCAAGTGTTCCAAAGTTCATCTCCTTCCACCACCATTCCTCCCCATCACAACCATCAAATTCTTCCCCAAATATGTCTCACAATTGCTTCTCGTATCCCTACCCGAGCTCGATCCCGAGCCCGAACCCACCTCCACCGTCATCTCCGCCGCTCCGAGAGGCTCTTCCGCTACTTGGGCTAATGTCTCCTCCCGAGCAGAGGCAAGAACAAGAAGAAGATGACGATGATGGAGGTAGCAAAGACGAGAACGCGTCGGTGACCGTGGCGTTGCACATAGGGCTACCAAACCCTAGCCCAGCTGAAATAGCTTCCTTGATGTGTGGCTCTTCATCTGAGATTGATCAAGAACATGAGTTTGGACAGTCCACCAAAACCCTAATTAAGGGACAGTATTGGATCCCAACTCCTTCTCAAATCCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCACATGTGGGGGCATGGTTCACAATACAGAAAAGGCCCTGAGTCCCTCCGGGGAACGCAGCCAACGGGCATGCTAAGGCTTCCTTGCTACTGCTGTGCCCCGGGGTGCCGCAACAACATCGACCATCCCCGGGCCAAGCCATTGAAAGACTTCAGAACTCTTCAAACACATTACAAGCGCAAGCACGGGCTAAAGCCCTTCATGTGCCGAAAGTGTGGCAAGGCGTTCGCCGTGCGCGGGGACTGGCGAACGCACGAGAAGAATTGTGGTAAGCTTTGGTACTGCATTTGTGGCTCGGATTTTAAGCACAAGCGCTCGCTCAAGGACCATGTCAAGGCCTTTGGTAATGACCACGCTGCTTACGGTGGAGGCGGGATCGATGTGTTCGGAGATGAAGATGATGAGCCTGCTTCTGAAGTCGAGCAAGATAACGATGAATGA 957 51.52 MSNPCSNSLASVPKFISFHHHSSPSQPSNSSPNMSHNCFSYPYPSSIPSPNPPPPSSPPLREALPLLGLMSPPEQRQEQEEDDDDGGSKDENASVTVALHIGLPNPSPAEIASLMCGSSSEIDQEHEFGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDVFGDEDDEPASEVEQDNDE 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 930592 932929 - CmaCh03G000930.1 Cma03g00093 289664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00093 318 MobiDBLite consensus disorder prediction 18 65 - -
Cma03g00093 318 MobiDBLite consensus disorder prediction 300 318 - -
Cma03g00093 318 Gene3D Classic Zinc Finger 154 177 - -
Cma03g00093 318 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 18 317 - -
Cma03g00093 318 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Cma03g00093 318 MobiDBLite consensus disorder prediction 299 318 - -
Cma03g00093 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 259 IPR013087 -
Cma03g00093 318 Gene3D Classic Zinc Finger 217 292 - -
Cma03g00093 318 SUPERFAMILY beta-beta-alpha zinc fingers 151 177 IPR036236 -
Cma03g00093 318 MobiDBLite consensus disorder prediction 18 44 - -
Cma03g00093 318 SMART c2h2final6 239 259 IPR013087 -
Cma03g00093 318 SMART c2h2final6 155 177 IPR013087 -
Cma03g00093 318 SUPERFAMILY beta-beta-alpha zinc fingers 224 259 IPR036236 -
Cma03g00093 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Cma03g00093 318 MobiDBLite consensus disorder prediction 45 61 - -
Cma03g00093 318 PANTHER ZINC FINGER PROTEIN WIP2 18 317 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01240 Cma-Chr2:7287914 Cma03g00093 Cma-Chr3:930592 7.31E-130 dispersed
Cma03g00093 Cma-Chr3:930592 Cma06g00080 Cma-Chr6:448777 1.51E-134 dispersed
Cma13g00292 Cma-Chr13:2709643 Cma03g00093 Cma-Chr3:930592 1.68E-104 transposed
Cma03g00093 Cma-Chr3:930592 Cma07g01295 Cma-Chr7:7333650 2.99E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34585 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00093 - - bhj:120074233 533.487