Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma03g00101 | ATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAGTCCTACTTGGTTCGAGTGGGAAGCTTGGAGTTTATTCAACCAATGGCGTGCAAGAATTGCTCGAGTGTCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCAAACGGCCACACACTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTGCTGCCCGACCTGTCGTCATGAACTCGGAAACATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCCTGCAGATACCAGAATTTGGGTTGCCAAGATATTTTCCCTTACTACAGTAAGCTTAAGCATGAGCAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCCGAGTGCTCGGTCACGGGCGACATCCCGTCTCTTGTTGCACATCTCAAAGATGATCACAAGGTTGACATGCACGACGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTTGAAAACGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAGACAGTTCTGCTTGCATTTCGAGGCGTTCCAGCTAGGAACAGCGCCTGTTTACATGGCGTTCTTACGATTCATGGGCGAAGATAACGAAGCAAAAAAGTTCAGCTACAGTTTGGAAGTGGGTCACAACGGGCGTAAACTGATATGGCAAGGAATTCCGAGAGGCATCCGTGACAGTCACCGAAAAGTTCGTGATAGTCAAGACGGTCTCATCATTCAAAGAAATCTGGCACTGTATTTTTCGGGGGGAGAAAGACGAGAGCTGAAACTGAGAATCACGGGTCGAATATGGAAAGAAGAATGA | 852 | 46.71 | MSKSENNSTSSKVLLGSSGKLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNCCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGTAPVYMAFLRFMGEDNEAKKFSYSLEVGHNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERRELKLRITGRIWKEE | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1054954 | 1056707 | + | CmaCh03G001010.1 | Cma03g00101 | 289672 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma03g00101 | 283 | Pfam | Seven in absentia protein family | 77 | 276 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Cma03g00101 | 283 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 142 | IPR013083 | - | |
| Cma03g00101 | 283 | ProSiteProfiles | Zinc finger SIAH-type profile. | 88 | 148 | IPR013010 | GO:0008270 | |
| Cma03g00101 | 283 | SUPERFAMILY | RING/U-box | 29 | 76 | - | - | |
| Cma03g00101 | 283 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 87 | IPR013083 | - | |
| Cma03g00101 | 283 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 283 | - | - | |
| Cma03g00101 | 283 | SUPERFAMILY | TRAF domain-like | 88 | 280 | - | - | |
| Cma03g00101 | 283 | CDD | RING-HC_SIAHs | 33 | 71 | - | - | |
| Cma03g00101 | 283 | ProSiteProfiles | Zinc finger RING-type profile. | 35 | 71 | IPR001841 | - | |
| Cma03g00101 | 283 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 143 | 276 | IPR008974 | GO:0005515 | |
| Cma03g00101 | 283 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED | 1 | 283 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g00101 | Cma-Chr3:1054954 | Cma18g01332 | Cma-Chr18:10151205 | 1.45E-146 | dispersed | |
| Cma03g00101 | Cma-Chr3:1054954 | Cma07g01290 | Cma-Chr7:7273739 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma03g00101 | K04506 | - | qsu:112038361 | 545.428 |