Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00103 ATGTTTAACAACTCATCAAAGGGAGAAATCGATTCACACGGCGGAGGAATGAACGTAAACGCATCAAATTTCGTAAAACACCCACCAGATTACCTGAGAAGAATCGATCAAATAGCAAAAACCGCCGCGAATTCCGGCAATCAGACGGCGACAGTAAACTCCGAGGGTTATTCAAAAACCCACTTCCGGTGCGACAGTTTGGAGGCACCGGGAGTGGTGATTAAGCCGCACACCGGCGGAGATGCGCGGTGGGATGCGATTAATATGGTGTCGAAAGGGGCGGCGTTGAATTTGAGCCATTTTCAGCTGTTGAAGAGGCTTGGTTATGGGGATATTGGGAGTGTTTATTTGGTGGAATTGAGAGGGACTGATACGTTCTTTGCTATGAAAGTGATGGATAAGGTGTCTTTGGCTAGCCGGAATAAGGTGTTGAGGGCGCAAACGGAGAGGGAGATTTTGGGGCTTTTGGATCATCCCTTTTTGCCCACTCTTTATTCTTATTTTGAAACTGATAAGTTTTATTGTTTGGTTATGGAGTTTTGTAGCGGTGGGAATCTTCATTCTCTTCGCCAAAAGCAACCTTACAAGTATTTTACTGAAGAAGCTGCCAGGTTCTATGCATCAGAGGTTCTATTAGCATTGGAATACCTTCACATGTTAGGCATAGTCTACAGAGATTTGAAACCCGAAAACCTGTTAATCCGAGACGAAGGCCACATCATGCTCTCCGATTTCGACCTCTCCCTTCGCTGCTCTGTCAGCCCGACCCTCGTCAAATCCTCCTCCATCAACGTCAACGGCAGCTCCAACACCGGCAGCAACGGCAGCAATGGTGGAGGCAGCGGTGGCATTCTCGACGACGAATCCGCTGTCCATGGCTGCATGCAACCTTCCAATTTCCTCCCTCGCATTCTCCCTTCCAAGAAGAATCGCAAGTCGAAATCCGACTTCGGCCTCTTCGTCGGTGGCTCCCTCCCGGAACTCATGGCCGAACCAACCAACGTTCGGTCTATGTCCTTTGTCGGTACACACGAGTATCTCGCACCGGAGATCATACAAGGGGAAGGTCACGGCAGCGCGGTCGACTGGTGGACCTTTGGGATCTTCCTCTACGAGCTTCTTCATGGGACCACACCCTTCAAAGGGTCTGGAAATAGAGCCACGCTTTTCAACGTGGTGGAGCAGCCGCTTAGGTTCCCGGAGGCACCGCAGGCCAGCCTAGCCGCTAGGGATCTCATCAGAGGGCTTCTGGTCAAGGAGCCGCAAAAGAGGATCGCTTATAGAAGAGGCGCCACTGAGATCAAGCAGCATCCCTTCTTTGATGGAGTGAATTGGGCGTTGGTGAGAAGCGCAATGCCGCCACACGTGCCGGAGCCGGTGGATTTCAGCCAGTTTGCCAGAAAGAAGGGCGGCGGCGGAGTGCAGGAAGAGAAGAAGCCGGTGGCTGCTGAGAATTCTTCGCCGTCGACTGGTGGCGATCCCAATTATGTGGATTTTGAATACTTCTAA 1509 51.16 MFNNSSKGEIDSHGGGMNVNASNFVKHPPDYLRRIDQIAKTAANSGNQTATVNSEGYSKTHFRCDSLEAPGVVIKPHTGGDARWDAINMVSKGAALNLSHFQLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKVSLASRNKVLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPYKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSINVNGSSNTGSNGSNGGGSGGILDDESAVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVEQPLRFPEAPQASLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFARKKGGGGVQEEKKPVAAENSSPSTGGDPNYVDFEYF 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1066159 1069589 - CmaCh03G001030.1 Cma03g00103 289674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00103 502 Pfam Protein kinase domain 102 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00103 502 Pfam Protein kinase domain 328 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00103 502 ProSiteProfiles Protein kinase domain profile. 101 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00103 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Cma03g00103 502 MobiDBLite consensus disorder prediction 466 497 - -
Cma03g00103 502 SMART serkin_6 101 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00103 502 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 41 502 - -
Cma03g00103 502 Gene3D Phosphorylase Kinase; domain 1 99 184 - -
Cma03g00103 502 CDD STKc_phototropin_like 99 461 - -
Cma03g00103 502 PANTHER FLIPPASE KINASE 1-RELATED 41 502 - -
Cma03g00103 502 SUPERFAMILY Protein kinase-like (PK-like) 98 464 IPR011009 -
Cma03g00103 502 Gene3D Transferase(Phosphotransferase) domain 1 185 254 - -
Cma03g00103 502 Gene3D Transferase(Phosphotransferase) domain 1 315 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00103 Cma-Chr3:1066159 Cma18g00622 Cma-Chr18:5507489 0 dispersed
Cma03g00103 Cma-Chr3:1066159 Cma07g01286 Cma-Chr7:7254872 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68392 PF00069 Pkinase 2.10E-21 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00103 - - cmos:111435499 963.755