Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g00103 | ATGTTTAACAACTCATCAAAGGGAGAAATCGATTCACACGGCGGAGGAATGAACGTAAACGCATCAAATTTCGTAAAACACCCACCAGATTACCTGAGAAGAATCGATCAAATAGCAAAAACCGCCGCGAATTCCGGCAATCAGACGGCGACAGTAAACTCCGAGGGTTATTCAAAAACCCACTTCCGGTGCGACAGTTTGGAGGCACCGGGAGTGGTGATTAAGCCGCACACCGGCGGAGATGCGCGGTGGGATGCGATTAATATGGTGTCGAAAGGGGCGGCGTTGAATTTGAGCCATTTTCAGCTGTTGAAGAGGCTTGGTTATGGGGATATTGGGAGTGTTTATTTGGTGGAATTGAGAGGGACTGATACGTTCTTTGCTATGAAAGTGATGGATAAGGTGTCTTTGGCTAGCCGGAATAAGGTGTTGAGGGCGCAAACGGAGAGGGAGATTTTGGGGCTTTTGGATCATCCCTTTTTGCCCACTCTTTATTCTTATTTTGAAACTGATAAGTTTTATTGTTTGGTTATGGAGTTTTGTAGCGGTGGGAATCTTCATTCTCTTCGCCAAAAGCAACCTTACAAGTATTTTACTGAAGAAGCTGCCAGGTTCTATGCATCAGAGGTTCTATTAGCATTGGAATACCTTCACATGTTAGGCATAGTCTACAGAGATTTGAAACCCGAAAACCTGTTAATCCGAGACGAAGGCCACATCATGCTCTCCGATTTCGACCTCTCCCTTCGCTGCTCTGTCAGCCCGACCCTCGTCAAATCCTCCTCCATCAACGTCAACGGCAGCTCCAACACCGGCAGCAACGGCAGCAATGGTGGAGGCAGCGGTGGCATTCTCGACGACGAATCCGCTGTCCATGGCTGCATGCAACCTTCCAATTTCCTCCCTCGCATTCTCCCTTCCAAGAAGAATCGCAAGTCGAAATCCGACTTCGGCCTCTTCGTCGGTGGCTCCCTCCCGGAACTCATGGCCGAACCAACCAACGTTCGGTCTATGTCCTTTGTCGGTACACACGAGTATCTCGCACCGGAGATCATACAAGGGGAAGGTCACGGCAGCGCGGTCGACTGGTGGACCTTTGGGATCTTCCTCTACGAGCTTCTTCATGGGACCACACCCTTCAAAGGGTCTGGAAATAGAGCCACGCTTTTCAACGTGGTGGAGCAGCCGCTTAGGTTCCCGGAGGCACCGCAGGCCAGCCTAGCCGCTAGGGATCTCATCAGAGGGCTTCTGGTCAAGGAGCCGCAAAAGAGGATCGCTTATAGAAGAGGCGCCACTGAGATCAAGCAGCATCCCTTCTTTGATGGAGTGAATTGGGCGTTGGTGAGAAGCGCAATGCCGCCACACGTGCCGGAGCCGGTGGATTTCAGCCAGTTTGCCAGAAAGAAGGGCGGCGGCGGAGTGCAGGAAGAGAAGAAGCCGGTGGCTGCTGAGAATTCTTCGCCGTCGACTGGTGGCGATCCCAATTATGTGGATTTTGAATACTTCTAA | 1509 | 51.16 | MFNNSSKGEIDSHGGGMNVNASNFVKHPPDYLRRIDQIAKTAANSGNQTATVNSEGYSKTHFRCDSLEAPGVVIKPHTGGDARWDAINMVSKGAALNLSHFQLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKVSLASRNKVLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPYKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSINVNGSSNTGSNGSNGGGSGGILDDESAVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVEQPLRFPEAPQASLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFARKKGGGGVQEEKKPVAAENSSPSTGGDPNYVDFEYF | 502 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1066159 | 1069589 | - | CmaCh03G001030.1 | Cma03g00103 | 289674 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g00103 | 502 | Pfam | Protein kinase domain | 102 | 254 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma03g00103 | 502 | Pfam | Protein kinase domain | 328 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma03g00103 | 502 | ProSiteProfiles | Protein kinase domain profile. | 101 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma03g00103 | 502 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 222 | 234 | IPR008271 | GO:0004672|GO:0006468 | |
Cma03g00103 | 502 | MobiDBLite | consensus disorder prediction | 466 | 497 | - | - | |
Cma03g00103 | 502 | SMART | serkin_6 | 101 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma03g00103 | 502 | PANTHER | SERINE/THREONINE-PROTEIN KINASE AGC1-5 | 41 | 502 | - | - | |
Cma03g00103 | 502 | Gene3D | Phosphorylase Kinase; domain 1 | 99 | 184 | - | - | |
Cma03g00103 | 502 | CDD | STKc_phototropin_like | 99 | 461 | - | - | |
Cma03g00103 | 502 | PANTHER | FLIPPASE KINASE 1-RELATED | 41 | 502 | - | - | |
Cma03g00103 | 502 | SUPERFAMILY | Protein kinase-like (PK-like) | 98 | 464 | IPR011009 | - | |
Cma03g00103 | 502 | Gene3D | Transferase(Phosphotransferase) domain 1 | 185 | 254 | - | - | |
Cma03g00103 | 502 | Gene3D | Transferase(Phosphotransferase) domain 1 | 315 | 458 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00103 | Cma-Chr3:1066159 | Cma18g00622 | Cma-Chr18:5507489 | 0 | dispersed | |
Cma03g00103 | Cma-Chr3:1066159 | Cma07g01286 | Cma-Chr7:7254872 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68392 | PF00069 | Pkinase | 2.10E-21 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g00103 | - | - | cmos:111435499 | 963.755 |