Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00130 ATGGGATCTTCTGTTGCTGCAATGGGCATGGTTTCCGACTCAACATTCCATGTTCTTGCCGTCGATGATAGCGTCATCGACCGGAAATTGATTGAAAGGCTCCTCAAAACCTCCTCTTATCAAGTTACTACGGTTGATTCTGGGAGTAAAGCTTTGGAGTTCTTGGGTTATGACTCTGGAAATAACTCGATTCCTTCTCTTGCATCTAACCATCATCATCATCATCAGGAAGTGGATGTAAATCTTGTTATCACTGATTACTGTATGCCTGAGATGACTGGCTATGATTTATTGAAGAAGATCAAGGGGTCTAAAGCTCTGAGAAACATTCCCGTTGTGATTATGTCATCTGAGAATGTTCCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCTGTCCGACTTTCAGATGTCAACCGGCTTAGACCCCACATGTTGAAAACCAAACTCAAAACATCAGAAGAACAGCCTGATTCAGCAAGCCAACCCCAAGCACGAGAGCAGCAACAACATGAACAACATGAACAGCATGAACAACATGAACAAGAACGATTACGATCGATACCGTTGCAGGTTGTCCCGACATCGCTGCAAGATCAAGATCGATTGCTATCCGTTCCACTGCTGCCGACGCTGCCACAAGAGCAAGAACAGTTGCAAATACTCCCGCCAACGCCGCCGCAACAATCGAACAACAACAAGAGGAAGGCCATGGAAGATGGACTTTCACCAGATAGAACAAGGCCAAGATACAATGGTATTACCACCATGGTGTAG 798 44.61 MGSSVAAMGMVSDSTFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDSGNNSIPSLASNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKTSEEQPDSASQPQAREQQQHEQHEQHEQHEQERLRSIPLQVVPTSLQDQDRLLSVPLLPTLPQEQEQLQILPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1360782 1362893 - CmaCh03G001300.1 Cma03g00130 289701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00130 265 MobiDBLite consensus disorder prediction 155 190 - -
Cma03g00130 265 CDD REC_typeA_ARR 18 148 - -
Cma03g00130 265 Pfam Response regulator receiver domain 18 144 IPR001789 GO:0000160
Cma03g00130 265 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 263 IPR045279 GO:0009736
Cma03g00130 265 MobiDBLite consensus disorder prediction 225 265 - -
Cma03g00130 265 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 11 263 - -
Cma03g00130 265 ProSiteProfiles Response regulatory domain profile. 17 153 IPR001789 GO:0000160
Cma03g00130 265 SUPERFAMILY CheY-like 16 161 IPR011006 -
Cma03g00130 265 SMART REC_2 16 149 IPR001789 GO:0000160
Cma03g00130 265 MobiDBLite consensus disorder prediction 225 244 - -
Cma03g00130 265 MobiDBLite consensus disorder prediction 175 190 - -
Cma03g00130 265 Gene3D - 17 252 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00130 Cma07g01364 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00130 Cma-Chr3:1360782 Cma15g00834 Cma-Chr15:4217333 3.60E-71 dispersed
Cma04g00100 Cma-Chr4:495945 Cma03g00130 Cma-Chr3:1360782 9.83E-50 dispersed
Cma04g01330 Cma-Chr4:6804061 Cma03g00130 Cma-Chr3:1360782 1.12E-70 transposed
Cma14g00515 Cma-Chr14:2564303 Cma03g00130 Cma-Chr3:1360782 2.75E-81 wgd
Cma03g00130 Cma-Chr3:1360782 Cma07g01364 Cma-Chr7:7780371 4.41E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34586 PF00072 Response_reg 7.80E-19 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00130 K14492 - csv:101220999 404.06