Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g00130 | ATGGGATCTTCTGTTGCTGCAATGGGCATGGTTTCCGACTCAACATTCCATGTTCTTGCCGTCGATGATAGCGTCATCGACCGGAAATTGATTGAAAGGCTCCTCAAAACCTCCTCTTATCAAGTTACTACGGTTGATTCTGGGAGTAAAGCTTTGGAGTTCTTGGGTTATGACTCTGGAAATAACTCGATTCCTTCTCTTGCATCTAACCATCATCATCATCATCAGGAAGTGGATGTAAATCTTGTTATCACTGATTACTGTATGCCTGAGATGACTGGCTATGATTTATTGAAGAAGATCAAGGGGTCTAAAGCTCTGAGAAACATTCCCGTTGTGATTATGTCATCTGAGAATGTTCCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCTGTCCGACTTTCAGATGTCAACCGGCTTAGACCCCACATGTTGAAAACCAAACTCAAAACATCAGAAGAACAGCCTGATTCAGCAAGCCAACCCCAAGCACGAGAGCAGCAACAACATGAACAACATGAACAGCATGAACAACATGAACAAGAACGATTACGATCGATACCGTTGCAGGTTGTCCCGACATCGCTGCAAGATCAAGATCGATTGCTATCCGTTCCACTGCTGCCGACGCTGCCACAAGAGCAAGAACAGTTGCAAATACTCCCGCCAACGCCGCCGCAACAATCGAACAACAACAAGAGGAAGGCCATGGAAGATGGACTTTCACCAGATAGAACAAGGCCAAGATACAATGGTATTACCACCATGGTGTAG | 798 | 44.61 | MGSSVAAMGMVSDSTFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDSGNNSIPSLASNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKTSEEQPDSASQPQAREQQQHEQHEQHEQHEQERLRSIPLQVVPTSLQDQDRLLSVPLLPTLPQEQEQLQILPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1360782 | 1362893 | - | CmaCh03G001300.1 | Cma03g00130 | 289701 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g00130 | 265 | MobiDBLite | consensus disorder prediction | 155 | 190 | - | - | |
Cma03g00130 | 265 | CDD | REC_typeA_ARR | 18 | 148 | - | - | |
Cma03g00130 | 265 | Pfam | Response regulator receiver domain | 18 | 144 | IPR001789 | GO:0000160 | |
Cma03g00130 | 265 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 11 | 263 | IPR045279 | GO:0009736 | |
Cma03g00130 | 265 | MobiDBLite | consensus disorder prediction | 225 | 265 | - | - | |
Cma03g00130 | 265 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE | 11 | 263 | - | - | |
Cma03g00130 | 265 | ProSiteProfiles | Response regulatory domain profile. | 17 | 153 | IPR001789 | GO:0000160 | |
Cma03g00130 | 265 | SUPERFAMILY | CheY-like | 16 | 161 | IPR011006 | - | |
Cma03g00130 | 265 | SMART | REC_2 | 16 | 149 | IPR001789 | GO:0000160 | |
Cma03g00130 | 265 | MobiDBLite | consensus disorder prediction | 225 | 244 | - | - | |
Cma03g00130 | 265 | MobiDBLite | consensus disorder prediction | 175 | 190 | - | - | |
Cma03g00130 | 265 | Gene3D | - | 17 | 252 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g00130 | Cma07g01364 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00130 | Cma-Chr3:1360782 | Cma15g00834 | Cma-Chr15:4217333 | 3.60E-71 | dispersed | |
Cma04g00100 | Cma-Chr4:495945 | Cma03g00130 | Cma-Chr3:1360782 | 9.83E-50 | dispersed | |
Cma04g01330 | Cma-Chr4:6804061 | Cma03g00130 | Cma-Chr3:1360782 | 1.12E-70 | transposed | |
Cma14g00515 | Cma-Chr14:2564303 | Cma03g00130 | Cma-Chr3:1360782 | 2.75E-81 | wgd | |
Cma03g00130 | Cma-Chr3:1360782 | Cma07g01364 | Cma-Chr7:7780371 | 4.41E-134 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34586 | PF00072 | Response_reg | 7.80E-19 | CL0304 | Cma | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g00130 | K14492 | - | csv:101220999 | 404.06 |