Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00157 ATGGAAGGAAAGAGAAGTGGAATTGCCAATTTTGTTGAGGGAGCACAGCCTTACATTGCTATGATCTCTCTCCAATTTGGCTATGCTGGGATGAACATCATCACTAAGGTAGCTCTCAACCATGGAATGAGCCATTACGTTCTCGTCACCTATCGCCAAGCCTTTGCCACGATCGTGCTCGCTCCGTTCGCCTTTCTCTTCGAAAGGAAAGTAAGACCCAAGATTAGTTTTCGTCTGTTCGTGCAGATTTTCCTTCTGGGTTTGTTAGGACCAGTGATGAATCAAAACTTTTATTATGCTGGGTTGAAGCTCACTTCTCCTACCTTTTCATGTGCCATGAGCAATATGCTTCCGGCAATGACATTAATTTTAGCTCTTCTTTGCAGGATGGAGAAATTGGAGATGAAGAAAGTGAGGTGCCAAGCCAAGGTGGTGGGAACAATGGTGACAGTGGGTGGAGCCATTTTGATGACTTTATACAAAGGGATTGACCTCTTTCAAACCACTTATCAACATTGGCTCAAGGGTTCCATTCTCCTCCTCTTTGCCAATCTTTCTTGGGCTTTCTTCTTCATCCTTCAGGCAATAACATTGAAGAATTACACAGCCCATCTGTCTCTTACAACCCTTGTGTGCTTCTTGGGGACATTGCAATCCATGGCTGTCACCTTTGTAATGGAAAACAAAGCTTCTGTTTGGAGCATTGGATGGGACATGAATCTTCTCGCTGCTGTTTATGCCGGAATAGTTTCATCAAGCATAGCTTACTATGTCCAAGGGATGATTATGCAAAAGAGAGGCCCTGTGTTTGTCACAGCCTTTACCCCTATCATCATGATCATTGTTGCTATAATGGCCTCTTTCATGCTCACCTACAACATTTACCTCGTACGTGTTGTTGGAGGTGCTATAATGGTGGTGGGGCTGTACTTAGTGCTATGGGGAAAATACAGAGATTACAAAGAAAATGAAGGAATGATAGAAGAGGCCGCCATTGTTGAACCAGTGAAGCTTGAGAAGAAGAAGAGGAAATTGGCAACAGTGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACGACAACATCATCATTAAACGACATCGAAATGCAAAGGAACGACACGACATCAAATGTCGACAATAATAATGTTACAAAATTGCCATGTCCTCCTCCACCACCCATTATTGTCGTCATAGAAGTTTGA 1215 42.88 MEGKRSGIANFVEGAQPYIAMISLQFGYAGMNIITKVALNHGMSHYVLVTYRQAFATIVLAPFAFLFERKVRPKISFRLFVQIFLLGLLGPVMNQNFYYAGLKLTSPTFSCAMSNMLPAMTLILALLCRMEKLEMKKVRCQAKVVGTMVTVGGAILMTLYKGIDLFQTTYQHWLKGSILLLFANLSWAFFFILQAITLKNYTAHLSLTTLVCFLGTLQSMAVTFVMENKASVWSIGWDMNLLAAVYAGIVSSSIAYYVQGMIMQKRGPVFVTAFTPIIMIIVAIMASFMLTYNIYLVRVVGGAIMVVGLYLVLWGKYRDYKENEGMIEEAAIVEPVKLEKKKRKLATVVEEEEEEEEEEEEETTTSSLNDIEMQRNDTTSNVDNNNVTKLPCPPPPPIIVVIEV 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2070672 2073949 - CmaCh03G001570.1 Cma03g00157 289728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00157 404 Pfam EamA-like transporter family 18 157 IPR000620 GO:0016020|GO:0016021
Cma03g00157 404 Pfam EamA-like transporter family 175 313 IPR000620 GO:0016020|GO:0016021
Cma03g00157 404 MobiDBLite consensus disorder prediction 347 395 - -
Cma03g00157 404 PANTHER WAT1-RELATED PROTEIN 12 341 IPR030184 GO:0016021|GO:0022857
Cma03g00157 404 Coils Coil 338 362 - -
Cma03g00157 404 MobiDBLite consensus disorder prediction 367 388 - -
Cma03g00157 404 MobiDBLite consensus disorder prediction 350 366 - -
Cma03g00157 404 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 161 - -
Cma03g00157 404 PANTHER WAT1-RELATED PROTEIN 12 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00157 Cma-Chr3:2070672 Cma18g00826 Cma-Chr18:7215575 1.69E-152 dispersed
Cma14g00498 Cma-Chr14:2435324 Cma03g00157 Cma-Chr3:2070672 2.04E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00157 - - cpep:111803342 687.952