Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma03g00158 | ATGCAAAGGAGCGTGGGGGATACGCGCTTGAGAAATTATGATGGGGAACAAAATCTTATGGATCTTTACAACACTCACTTTCAGTTTCTGGAAATTTTTGCTGTTTTTGGTGTTCTTCTTCAAAGGGGGTTTCAGTTGTTGACCAGGACGAAGAACTGTGAAGTGGGTTGGAGTTTGATTGGGGAAATAATGAGGGAAGAACACTCCAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATAACTCCCGATCTAGCTTTGGCTTTTGATATTCAGAATTCCAGTAATACCAGTCCGCCCTTGCCCTGTCCATCTCCGCCGCTTTCGAATCCTCTCCCTGGCTCCGGCAATGGAATTGCGCCGCCCAACTCGGCGGATTTCGGTGATTCCGCCGATTTGGGTTCTGGGGCTGCTAGCGACGAACCGGCTCGAACCCTCAAGCGGCCGCGTCTCGTTTGGACACCTCAACTCCATAAGCGATTCGTCGATGCTGTTGCTCATTTGGGTATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTTGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAACGGATGCAGGGCTTGTCCAGCGGCGGCGGTGGTGGTGGTGGTGGTGGATTGGTTGCTTCCTCAGATCCCACTGACCATTTGTTCGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCGGCTCGCTCCACTTCAGACCATTTCTTGCCCTTTGTTCCAATGGCCACTTTACAGCAACACCACCATCACCAGCAGCATATGGCTGCTGCTGCTGCTGCTGCTGCTGTCGCCGGGCATCCACAGCTCCAGCCGTCGTATCATCGACAAGTCGGGCATTTCGGGTCGCCCCCGAATGGCCAGTTTGAGCATCCATTCTTAGCTAGACAATCCCAACCAGTCCATAGAATGGGTGCACCAGTGCATAGCTCAATTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCAATGGTGGAAGAAAAGTTCTCACCTTATTCCCTACTGGGGATGATTGA | 1104 | 51.09 | MQRSVGDTRLRNYDGEQNLMDLYNTHFQFLEIFAVFGVLLQRGFQLLTRTKNCEVGWSLIGEIMREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNSSNTSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGGLVASSDPTDHLFASSPVPPHLLHSARSTSDHFLPFVPMATLQQHHHHQQHMAAAAAAAAVAGHPQLQPSYHRQVGHFGSPPNGQFEHPFLARQSQPVHRMGAPVHSSIPNYIEDLESANANGGRKVLTLFPTGDD | 367 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2122692 | 2124244 | + | CmaCh03G001580.1 | Cma03g00158 | 289729 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma03g00158 | 367 | Pfam | Myb-like DNA-binding domain | 164 | 212 | IPR001005 | - | |
| Cma03g00158 | 367 | PANTHER | HOMEODOMAIN-LIKE PROTEIN-RELATED | 64 | 367 | - | - | |
| Cma03g00158 | 367 | Gene3D | - | 157 | 219 | - | - | |
| Cma03g00158 | 367 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 161 | 213 | IPR006447 | GO:0003677 | |
| Cma03g00158 | 367 | MobiDBLite | consensus disorder prediction | 107 | 154 | - | - | |
| Cma03g00158 | 367 | SUPERFAMILY | Homeodomain-like | 157 | 217 | IPR009057 | - | |
| Cma03g00158 | 367 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 64 | 367 | IPR044841 | GO:0003700|GO:0006355 | |
| Cma03g00158 | 367 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 165 | 216 | IPR017930 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g00786 | Cma-Chr2:4668490 | Cma03g00158 | Cma-Chr3:2122692 | 1.37E-35 | dispersed | |
| Cma03g00158 | Cma-Chr3:2122692 | Cma06g00034 | Cma-Chr6:206551 | 1.40E-110 | dispersed | |
| Cma07g01099 | Cma-Chr7:5948982 | Cma03g00158 | Cma-Chr3:2122692 | 7.41E-159 | transposed | |
| Cma14g00494 | Cma-Chr14:2422084 | Cma03g00158 | Cma-Chr3:2122692 | 1.01E-113 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34588 | PF00249 | Myb_DNA-binding | 3.00E-08 | CL0123 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma03g00158 | - | - | cmax:111467241 | 535.028 |