Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00158 ATGCAAAGGAGCGTGGGGGATACGCGCTTGAGAAATTATGATGGGGAACAAAATCTTATGGATCTTTACAACACTCACTTTCAGTTTCTGGAAATTTTTGCTGTTTTTGGTGTTCTTCTTCAAAGGGGGTTTCAGTTGTTGACCAGGACGAAGAACTGTGAAGTGGGTTGGAGTTTGATTGGGGAAATAATGAGGGAAGAACACTCCAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATAACTCCCGATCTAGCTTTGGCTTTTGATATTCAGAATTCCAGTAATACCAGTCCGCCCTTGCCCTGTCCATCTCCGCCGCTTTCGAATCCTCTCCCTGGCTCCGGCAATGGAATTGCGCCGCCCAACTCGGCGGATTTCGGTGATTCCGCCGATTTGGGTTCTGGGGCTGCTAGCGACGAACCGGCTCGAACCCTCAAGCGGCCGCGTCTCGTTTGGACACCTCAACTCCATAAGCGATTCGTCGATGCTGTTGCTCATTTGGGTATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTTGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAACGGATGCAGGGCTTGTCCAGCGGCGGCGGTGGTGGTGGTGGTGGTGGATTGGTTGCTTCCTCAGATCCCACTGACCATTTGTTCGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCGGCTCGCTCCACTTCAGACCATTTCTTGCCCTTTGTTCCAATGGCCACTTTACAGCAACACCACCATCACCAGCAGCATATGGCTGCTGCTGCTGCTGCTGCTGCTGTCGCCGGGCATCCACAGCTCCAGCCGTCGTATCATCGACAAGTCGGGCATTTCGGGTCGCCCCCGAATGGCCAGTTTGAGCATCCATTCTTAGCTAGACAATCCCAACCAGTCCATAGAATGGGTGCACCAGTGCATAGCTCAATTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCAATGGTGGAAGAAAAGTTCTCACCTTATTCCCTACTGGGGATGATTGA 1104 51.09 MQRSVGDTRLRNYDGEQNLMDLYNTHFQFLEIFAVFGVLLQRGFQLLTRTKNCEVGWSLIGEIMREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNSSNTSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGGLVASSDPTDHLFASSPVPPHLLHSARSTSDHFLPFVPMATLQQHHHHQQHMAAAAAAAAVAGHPQLQPSYHRQVGHFGSPPNGQFEHPFLARQSQPVHRMGAPVHSSIPNYIEDLESANANGGRKVLTLFPTGDD 367
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 2122692 2124244 + CmaCh03G001580.1 Cma03g00158 289729
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00158 367 Pfam Myb-like DNA-binding domain 164 212 IPR001005 -
Cma03g00158 367 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 64 367 - -
Cma03g00158 367 Gene3D - 157 219 - -
Cma03g00158 367 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 161 213 IPR006447 GO:0003677
Cma03g00158 367 MobiDBLite consensus disorder prediction 107 154 - -
Cma03g00158 367 SUPERFAMILY Homeodomain-like 157 217 IPR009057 -
Cma03g00158 367 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 64 367 IPR044841 GO:0003700|GO:0006355
Cma03g00158 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 216 IPR017930 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00786 Cma-Chr2:4668490 Cma03g00158 Cma-Chr3:2122692 1.37E-35 dispersed
Cma03g00158 Cma-Chr3:2122692 Cma06g00034 Cma-Chr6:206551 1.40E-110 dispersed
Cma07g01099 Cma-Chr7:5948982 Cma03g00158 Cma-Chr3:2122692 7.41E-159 transposed
Cma14g00494 Cma-Chr14:2422084 Cma03g00158 Cma-Chr3:2122692 1.01E-113 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34588 PF00249 Myb_DNA-binding 3.00E-08 CL0123 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00158 - - cmax:111467241 535.028