Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00161 ATGGCCCTTAACCCACTTCGCCGGCATTGTTCCGAATGGGCAAAAACGACGGAGAACAGCCACCGCAGTCCGCCGTCGGCTCCAGGCCATCAGGCCAAGCTTCCGATGGCCGATTCTGTTGTGGGTGTGTTTCGATTCGAAGCCTCATTGGCTTTAGATGCATCTTCATTCTGCTATTGTCCGTTGCCTTGTTCGTTTCTGCTGTTTTTTGGCTTCCCCCTTTTCTCCATTATGCAGATCAAAAGGATCCGAGTCTTAAATCCCCGTCATGATATATTAGCGACATTCAATGTTGAGAGACCCGTTTCTTTGCTGAAAGACAATGTCGAGCAGCTCCAAACCGACATTTTTGAAGAGTTCCCTATACCGTCTATCAAAGTGGATGTACTATATCTAGATTCGTTATCTGGATCAAACTGTACGACAGTTGTGTTCAGCCTCGATTCAGATATGGATGATTCAGAAATCTCGCAGACTTATCTAAGTTTAATCAGGTCGACGTTTGCAAGTCTAGTAACGAATCAGTCGTTCCTCCATGTTACCAAATCCATGTTCGGGGAGGCCTTTTCGTTTGAAGTACTGAAATTCCCGGGAGGAATAACGATAATCCCGCCACAGAGTGCATTTCTTTTGCAGAAAGTGCAAATTCTTTTCAACTTTACATTGAACTTCTCTGTTCATCAGATTCAAGTTCACTTCAGCGAACTGACCAGCCAACTGGAGGCAGGATTACGACTAGCTCCGTATGAGATCTTATATATTAAACTATGGAATGCGGAAGGTTCGACCGTGACTGCCCCTACGATTGTCCAGTCGTCTGTTCTTCTGGAAGTCGGAAATACTCCATCGATGCGACGACTGAAGCAGCTAGCTCAAACAATATCGGGTTCTAATTCTAGTAACCTCGGCCTGAATAATACAGAGTTCGGAAAAGTTAAGCAAGTTCGCCTTTCCTCGATTCTTAAACACTACCTCAATGGCAGTGAGGGGAACAGCCCTGTAAGGTCACCTTCTCCCGCTCCCGCTCCCGCTCCTACACCCCAGCCCCATAACCATAACTACCATCATCCCCCGACTCGCCACCATCACCACCATCACACCCCTGTTACGCCTGCAATTTCACCTGCCCCTACAACCGAGAAGGGTGCACCCGAATATGGTTCCCCTGCCCCTGAAAGAACAGCAGCATCCCCTAAGAGAAGTTCCAAGGCAGAGCCACCCGGTTGTCAATATAGATACAAGAGGAAGTCGAGTAGGAAAGAAGGAAAGCAATCTCCTGTTCATTCTGCTCCATCACCATCGCCAAAACATCGAGTCGTCTCTCCAGCTCCAGCATTAGCTCCATTACCAAACGTCGTTTACACTCACGTTCAACCACCGTCAAAAAGCAACTCCAACCACCACGAACCATCAATGATGAATCCATCATTTGCACCATCGCCATCCCCATCTGGTGCAGATCGTCATCGAACAATCACTCAATGGGGATTCACACTGTTTCTGATTCTCGCACACCATATGTAG 1524 47.51 MALNPLRRHCSEWAKTTENSHRSPPSAPGHQAKLPMADSVVGVFRFEASLALDASSFCYCPLPCSFLLFFGFPLFSIMQIKRIRVLNPRHDILATFNVERPVSLLKDNVEQLQTDIFEEFPIPSIKVDVLYLDSLSGSNCTTVVFSLDSDMDDSEISQTYLSLIRSTFASLVTNQSFLHVTKSMFGEAFSFEVLKFPGGITIIPPQSAFLLQKVQILFNFTLNFSVHQIQVHFSELTSQLEAGLRLAPYEILYIKLWNAEGSTVTAPTIVQSSVLLEVGNTPSMRRLKQLAQTISGSNSSNLGLNNTEFGKVKQVRLSSILKHYLNGSEGNSPVRSPSPAPAPAPTPQPHNHNYHHPPTRHHHHHHTPVTPAISPAPTTEKGAPEYGSPAPERTAASPKRSSKAEPPGCQYRYKRKSSRKEGKQSPVHSAPSPSPKHRVVSPAPALAPLPNVVYTHVQPPSKSNSNHHEPSMMNPSFAPSPSPSGADRHRTITQWGFTLFLILAHHM 507
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 2180558 2183890 - CmaCh03G001610.1 Cma03g00161 289732
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00161 507 MobiDBLite consensus disorder prediction 326 442 - -
Cma03g00161 507 MobiDBLite consensus disorder prediction 455 489 - -
Cma03g00161 507 MobiDBLite consensus disorder prediction 456 489 - -
Cma03g00161 507 MobiDBLite consensus disorder prediction 354 368 - -
Cma03g00161 507 MobiDBLite consensus disorder prediction 409 423 - -
Cma03g00161 507 PANTHER F20B24.21 89 504 - -
Cma03g00161 507 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 89 504 - -
Cma03g00161 507 MobiDBLite consensus disorder prediction 336 352 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma03g00161 Cma14g00506 CCT
Cma03g00161 Cma07g01106 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00161 Cma-Chr3:2180558 Cma04g00517 Cma-Chr4:2628762 1.94E-47 dispersed
Cma14g00506 Cma-Chr14:2469215 Cma03g00161 Cma-Chr3:2180558 9.31E-103 transposed
Cma03g00161 Cma-Chr3:2180558 Cma07g01106 Cma-Chr7:6002217 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00161 - - bhj:120073837 608.601