Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00173 ATGGATTTCTCACAGTCTTTAGATCCGCAAATCCTTCTGGGTTTGGCTGTGGCTGGTTTAGCCCTTGTCGTTGGCGCTCTCTATGTATTATCCTCGTCTAAAAAAAGCAAATCCAGAGGTTGCTTGGATCCAGAGATATTCAAGGAGTTTAAACTTATCAAACGCGTGCAGCTGAGCCATAATGTGGCAAAGTTTACATTTACACTCCCAAATCCTACTTCAGTTTTGGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTCATCAAACCGTACACACCGATTACTTTGGATTCTGATGTTGGATATTTTGAGCTCGTCATAAAGATGTATCCCCAAGGAAGGATGTCGCATCATTTCCGACAGATGCGTGTTGGCAATTTTCTTGCTGTAAAGGGGCCCAAGGGGCGTTTCAGGTATCAACCTGGCCAGGTCAGAGCATTTGGGATGCTCGCTGGAGGCTCCGGCATTACTCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACGAGACGAAGGTACATCTCATTTATGCCAATGTCACCTATGAGGACATTCTTTTAAAGGAGGAGTTGGATCTTCTTGCCAAAAGGTACCCAGATAGCTTCAAGCTCTATTATGTCTTAAACCAGCCTCCTGAAGAATGGGATGGTGGCGTCGGATTCGTATCGAAGGAGATGATTCAAACCCACTGCCCCGCTCCTGCTTCTGATATTCAGGTTTTAAGATGTGGGCCACCACCAATGAACAAGGCCATGGCTGCTCATCTTGAAGCTCTTGGATATGCACCTGAGATGCTGTTCATGTTCTGA 846 45.63 MDFSQSLDPQILLGLAVAGLALVVGALYVLSSSKKSKSRGCLDPEIFKEFKLIKRVQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGNFLAVKGPKGRFRYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDETKVHLIYANVTYEDILLKEELDLLAKRYPDSFKLYYVLNQPPEEWDGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYAPEMLFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2315618 2321188 - CmaCh03G001730.1 Cma03g00173 289744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00173 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Cma03g00173 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 281 IPR001834 GO:0016491
Cma03g00173 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491
Cma03g00173 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491
Cma03g00173 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
Cma03g00173 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cma03g00173 281 Gene3D - 138 281 IPR039261 -
Cma03g00173 281 CDD cyt_b5_reduct_like 50 281 - -
Cma03g00173 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Cma03g00173 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Cma03g00173 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Cma03g00173 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Cma03g00173 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Cma03g00173 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Cma03g00173 281 Gene3D Translation factors 40 137 - -
Cma03g00173 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 281 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00173 Cma07g01119 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00173 Cma-Chr3:2315618 Cma06g00055 Cma-Chr6:301096 1.01E-165 dispersed
Cma03g00173 Cma-Chr3:2315618 Cma07g01119 Cma-Chr7:6087617 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00173 K00326 - csv:101212569 511.916