Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00215 ATGCTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGATCAGATCACAGTTCATGAAGATGTAGCACAGAATCTTAAGAAACTGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTTTGGCCCCTCTGGTTCCGGAAAGAAAACCCTAGTCATGGCGCTTATCCGGCAGATGTTTGGAGCAAGTGCGGAGAAGGTGAAGGTGGAGAATAAAACCTGGAAAGTTGATGCTGGAACTAGAAATGTTGAAATAGAGTTAACCACCATATCAAGTACAAACCACGTCGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGATATGGCGAAAAACAGACCCATTGACTCCAAAGGGAAAAGAGGACATAAAGTTTTGGTTCTAAATGACGTTGACAAACTATCCAGAGAAGCACAGCACTCTCTTAGGAGAACGATGGAGAAATATAGCTCGTATTGTAGGTTAATACTTTGCTGCAATAGTTCATCAAGAGTAACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGATGATGAGATCGTCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGCATTGCAGAAAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTTAGTAACCAGGCAATACCGCCGATGGATTGGGAGGAGTACATCTCTGAGATAGCGTCTGACATAATGAAGGAGCAGAGCCCCAAGAGACTGTACCAGGTTCGTGGGAAGTTATATGAACTACTGGTTAATTGTATTCCACCAGAGATCATATTGAAGAGGCTGCTTTATGAGCTGCTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGGCTTGGCCAGAAATCCATCTTCCATATTGAAGGTAAATCCATTTGCTTTTGTGGCAAAGTTCATGAGCATATACAAGAGTTTCCTCATTTCAACGTTCGGCTGAGGAAAAGGCAATTGAATGTTCGTAGTTTTAGCGTGTCGGTGAATCAAGACAATCTGGTGCCATCTTATGTTCTTCAGTCAGTTTTGTTTGGCACTAGTTTGTTTGTTCATCATCCTTTAGGTCTGCCAACGTTGATTAGGCTGGAAGTCTGA 1230 43.01 MLWVDKYRPKTLDQITVHEDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFGASAEKVKVENKTWKVDAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTDDEIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIEGKSICFCGKVHEHIQEFPHFNVRLRKRQLNVRSFSVSVNQDNLVPSYVLQSVLFGTSLFVHHPLGLPTLIRLEV 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3256437 3263764 + CmaCh03G002150.1 Cma03g00215 289786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00215 409 CDD AAA 19 181 - -
Cma03g00215 409 SMART AAA_5 33 192 IPR003593 -
Cma03g00215 409 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 336 - -
Cma03g00215 409 SUPERFAMILY post-AAA+ oligomerization domain-like 251 336 IPR008921 GO:0003677|GO:0006260
Cma03g00215 409 Gene3D - 1 189 IPR027417 -
Cma03g00215 409 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 336 - -
Cma03g00215 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 239 IPR027417 -
Cma03g00215 409 Gene3D - 190 248 - -
Cma03g00215 409 Gene3D - 252 342 - -
Cma03g00215 409 Pfam DNA polymerase III, delta subunit 18 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00215 Cma-Chr3:3256437 Cma07g00480 Cma-Chr7:2093288 3.81E-68 dispersed
Cma03g00215 Cma-Chr3:3256437 Cma15g00666 Cma-Chr15:3169342 8.92E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00215 K10756 - csv:101221072 620.542