Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00248 ATGAACGACTTGATGACCAAATCGTTCACGAGCTATGTCGATTTGAAGAAGGCCGCCATGAAAGATATCGACCTCGAAGCCGGTTTAGAAATGGCATCGTCCGCTCCCGGCGACAATGGCGACATGGGTCTCTTTCTCGAAGAGGCCGAGAAGGTGAAAACCGAGATGGGTTCGATTAGAGAGATTTTATTGAAGCTTCAACAAGCCAATGAAGAGACCAAATCGGCTCATAAACCTGAAACCCTCAAATCGCTTCGGAATACGATCAATATCGACATTGTAACAGTTCTGAAAAAGGCTCGATCCATCCGATCCCACCTCGAGGAAATGGACCGTGCCAATGCTGCAAAGAAACGTCTCTCGGGTAGTAAAGAGGGCACTGCCATTTACAGAACACGAATTGCGGTGACGAACGGATTACGAAAGAAGCTAAAGGAGCTGATGATGGAGTTTCAGAGCTTGAGGCAGAGGATGATGACGGAGTATAAGGAGACGGTAGGACGGCGATACTTTACAGTGACGGGGGAGAAGGCGAATGAGGAGGTGATAGAGAAGATAATATCGGATGGCGTGGAGGAGTTTTTGGGGAGGGTGATAAAGGAGCACGGGCAAGGGGGGAAGGTGGTGGTGGCGGAGACGGTGGAGGAGATACAGGACCGACACGGGGCGGCGAAGGAGATAGAGAAGAGCTTGTTGGAGCTGCACCAAGTGTTCTTGGACATGGCGGTGATGGTGGAGGCACAAGGGGAGAAGATGGATAACATAGAACATCATGTGATGAATGCTTCGCAGTATGTTAGGGATGGAACAAAGGAATTGAAGAGTGCTAAGGAATTGCAAAGGAGTAGTAGGAAATGTATGTGTTTGGGGATTTTGCTATTGCTTTTGATTATTTTGGTTGTTGTTGTTCCTATTGGTGTTAGTTTTGGAAGTTCTTGA 939 47.92 MNDLMTKSFTSYVDLKKAAMKDIDLEAGLEMASSAPGDNGDMGLFLEEAEKVKTEMGSIREILLKLQQANEETKSAHKPETLKSLRNTINIDIVTVLKKARSIRSHLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEKANEEVIEKIISDGVEEFLGRVIKEHGQGGKVVVAETVEEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDNIEHHVMNASQYVRDGTKELKSAKELQRSSRKCMCLGILLLLLIILVVVVPIGVSFGSS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3546408 3547702 - CmaCh03G002480.1 Cma03g00248 289819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00248 312 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 214 276 IPR000727 -
Cma03g00248 312 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 305 - -
Cma03g00248 312 SMART SynN_4 37 163 IPR006011 GO:0016020
Cma03g00248 312 CDD SNARE_syntaxin1-like 213 274 - -
Cma03g00248 312 CDD SynN 42 195 IPR006011 GO:0016020
Cma03g00248 312 Pfam Syntaxin 45 249 IPR006011 GO:0016020
Cma03g00248 312 PANTHER SYNTAXIN 4 305 IPR045242 -
Cma03g00248 312 Pfam SNARE domain 251 302 IPR000727 -
Cma03g00248 312 ProSitePatterns Syntaxin / epimorphin family signature. 220 260 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma03g00248 312 Gene3D - 210 310 - -
Cma03g00248 312 Gene3D - 38 166 - -
Cma03g00248 312 SMART tSNARE_6 209 276 IPR000727 -
Cma03g00248 312 SUPERFAMILY t-snare proteins 41 269 IPR010989 GO:0016020|GO:0016192
Cma03g00248 312 Coils Coil 137 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00248 Cma-Chr3:3546408 Cma13g00676 Cma-Chr13:6245413 1.23E-89 dispersed
Cma03g00740 Cma-Chr3:5887631 Cma03g00248 Cma-Chr3:3546408 5.97E-68 transposed
Cma03g00248 Cma-Chr3:3546408 Cma07g01172 Cma-Chr7:6428287 5.18E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00248 K08486 - csv:101220775 495.738